miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 3' -53.4 NC_006151.1 + 713 0.67 0.945635
Target:  5'- cCGUCgcACCgggGGUCCGCgggcGGGGGCu -3'
miRNA:   3'- uGCAGa-UGGa--CCGGGUGaaa-CUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 111292 0.67 0.945635
Target:  5'- uACG-CgGCCUGGCCCACgaacgcGGCg -3'
miRNA:   3'- -UGCaGaUGGACCGGGUGaaacucUCG- -5'
29376 3' -53.4 NC_006151.1 + 70910 0.67 0.945635
Target:  5'- uGCG-CUGCCUGGCgCGCg-UGcuGGCg -3'
miRNA:   3'- -UGCaGAUGGACCGgGUGaaACucUCG- -5'
29376 3' -53.4 NC_006151.1 + 2734 0.66 0.954183
Target:  5'- gGCGaagcagGCCgGGCCCACgaUG-GAGCu -3'
miRNA:   3'- -UGCaga---UGGaCCGGGUGaaACuCUCG- -5'
29376 3' -53.4 NC_006151.1 + 97707 0.66 0.958096
Target:  5'- uGCGUC-ACgUGGCCCA-----GGAGCc -3'
miRNA:   3'- -UGCAGaUGgACCGGGUgaaacUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 11524 0.66 0.961773
Target:  5'- cGCGgcaCU-CCgGGCCCGCg-UGAGAGg -3'
miRNA:   3'- -UGCa--GAuGGaCCGGGUGaaACUCUCg -5'
29376 3' -53.4 NC_006151.1 + 91174 0.66 0.961773
Target:  5'- cACGUCgg---GcGCCCGCgagGGGAGCa -3'
miRNA:   3'- -UGCAGauggaC-CGGGUGaaaCUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 127532 0.66 0.96522
Target:  5'- cGCGUCaGCggGGCCCA----GGGGGCg -3'
miRNA:   3'- -UGCAGaUGgaCCGGGUgaaaCUCUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.