miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 3' -53.4 NC_006151.1 + 124673 0.71 0.788631
Target:  5'- uACGgcCUGCgCgagggGGCCCACg--GGGAGCa -3'
miRNA:   3'- -UGCa-GAUG-Ga----CCGGGUGaaaCUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 105147 0.71 0.779182
Target:  5'- cGCGUCgacgGCCgcgGGCCCAUg--GAcGAGUu -3'
miRNA:   3'- -UGCAGa---UGGa--CCGGGUGaaaCU-CUCG- -5'
29376 3' -53.4 NC_006151.1 + 121958 0.71 0.769595
Target:  5'- gGCGaCgacGCCgaGGCCUACUUUGAGcGCa -3'
miRNA:   3'- -UGCaGa--UGGa-CCGGGUGAAACUCuCG- -5'
29376 3' -53.4 NC_006151.1 + 110071 0.71 0.759879
Target:  5'- gACGUCUcUCUGGCCCA-----GGAGCu -3'
miRNA:   3'- -UGCAGAuGGACCGGGUgaaacUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 130916 0.74 0.615833
Target:  5'- uCGUCggugGCCgGGCCCGCgggggcGGGGGCg -3'
miRNA:   3'- uGCAGa---UGGaCCGGGUGaaa---CUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 64941 0.74 0.605351
Target:  5'- cGCGUCagcGCCUGGCCgCGCUgcGGGcGCa -3'
miRNA:   3'- -UGCAGa--UGGACCGG-GUGAaaCUCuCG- -5'
29376 3' -53.4 NC_006151.1 + 86122 0.74 0.602211
Target:  5'- cCGgCUACCUGGCCCugUacgauagggacggcgGGGAGCu -3'
miRNA:   3'- uGCaGAUGGACCGGGugAaa-------------CUCUCG- -5'
29376 3' -53.4 NC_006151.1 + 136559 1.11 0.003169
Target:  5'- uACGUCUACCUGGCCCACUUUGAGAGCu -3'
miRNA:   3'- -UGCAGAUGGACCGGGUGAAACUCUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.