Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 136597 | 1.06 | 0.001162 |
Target: 5'- gCGGCUCCGCGAGCACCUGGACGCCGUc -3' miRNA: 3'- -GCCGAGGCGCUCGUGGACCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 40068 | 0.82 | 0.059921 |
Target: 5'- cCGGC-CCGCGGGgGCCUcGGGCGCCGg -3' miRNA: 3'- -GCCGaGGCGCUCgUGGA-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 78131 | 0.8 | 0.088062 |
Target: 5'- gCGGCgggCCGCGGGCGCCUcGGAcgacgccucggcCGCCGUg -3' miRNA: 3'- -GCCGa--GGCGCUCGUGGA-CCU------------GCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 139564 | 0.8 | 0.083686 |
Target: 5'- gCGGCgcccggUCCGCGAGCGCCUGGgcucGCGCCc- -3' miRNA: 3'- -GCCG------AGGCGCUCGUGGACC----UGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 71090 | 0.8 | 0.083686 |
Target: 5'- aCGGCgCCGCGGGCGC--GGGCGCCGUg -3' miRNA: 3'- -GCCGaGGCGCUCGUGgaCCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 78406 | 0.8 | 0.092656 |
Target: 5'- gCGGCUcucgggCCGCGAGCGCCgUGGcccACGCCGUc -3' miRNA: 3'- -GCCGA------GGCGCUCGUGG-ACC---UGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 124916 | 0.79 | 0.099219 |
Target: 5'- aCGGCUCCuuccgcuucacgucGCGGGC-CCUGGGCGCCu- -3' miRNA: 3'- -GCCGAGG--------------CGCUCGuGGACCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 131525 | 0.78 | 0.110306 |
Target: 5'- aCGGCUggaagcgcugcucUUGCGAGCGCCUcGGGCGCCGc -3' miRNA: 3'- -GCCGA-------------GGCGCUCGUGGA-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 85218 | 0.76 | 0.168402 |
Target: 5'- gCGGgUCCcCGAGUACCUGGACGCg-- -3' miRNA: 3'- -GCCgAGGcGCUCGUGGACCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 21358 | 0.76 | 0.164356 |
Target: 5'- aCGGCUCCGCGGGCugCggccacccgcUGGGCacgacgGCCGg -3' miRNA: 3'- -GCCGAGGCGCUCGugG----------ACCUG------CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 106634 | 0.76 | 0.160399 |
Target: 5'- gCGGUcaC-CGAGCGCCUGGACGCCGc -3' miRNA: 3'- -GCCGagGcGCUCGUGGACCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 73218 | 0.76 | 0.160399 |
Target: 5'- aGGC-CCGCGGGCACCUgGGGCagcaucugGCCGa -3' miRNA: 3'- gCCGaGGCGCUCGUGGA-CCUG--------CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3951 | 0.75 | 0.19459 |
Target: 5'- gGGCUCCGCGGGC-CCgGGcCGCgCGg -3' miRNA: 3'- gCCGAGGCGCUCGuGGaCCuGCG-GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 11039 | 0.75 | 0.199286 |
Target: 5'- cCGGCcggCCGgGGGCccgGCCUGGACGCgGg -3' miRNA: 3'- -GCCGa--GGCgCUCG---UGGACCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 122548 | 0.74 | 0.224271 |
Target: 5'- cCGGC-CCGCcucgcGGCGCCUGuACGCCGUg -3' miRNA: 3'- -GCCGaGGCGc----UCGUGGACcUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 52794 | 0.73 | 0.257712 |
Target: 5'- gCGGCUCUGCGAGUAgUUGGugauGCgGCCGg -3' miRNA: 3'- -GCCGAGGCGCUCGUgGACC----UG-CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 81750 | 0.73 | 0.234989 |
Target: 5'- gCGGCgcggagcuggUCCGCGGGCGCCaccgGGACGCg-- -3' miRNA: 3'- -GCCG----------AGGCGCUCGUGGa---CCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 9046 | 0.73 | 0.257712 |
Target: 5'- gGGCgccCCGCGuGCuCCggGGGCGCCGg -3' miRNA: 3'- gCCGa--GGCGCuCGuGGa-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 6234 | 0.73 | 0.251868 |
Target: 5'- gCGGCgCCGgGAGC-CCUGGcugcCGCCGUc -3' miRNA: 3'- -GCCGaGGCgCUCGuGGACCu---GCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 75251 | 0.73 | 0.234989 |
Target: 5'- aGGCgcacugcaccUCCGCGGGCuCCUGGcgcaGCGCCGc -3' miRNA: 3'- gCCG----------AGGCGCUCGuGGACC----UGCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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