miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 137920 0.66 0.579357
Target:  5'- gCGGCUgCCaCGGGCGCCUgcuccccuuuggGGACGCg-- -3'
miRNA:   3'- -GCCGA-GGcGCUCGUGGA------------CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 87575 0.66 0.578386
Target:  5'- cCGGCggacgucUCCGCcGGCACCaucGACGCCa- -3'
miRNA:   3'- -GCCG-------AGGCGcUCGUGGac-CUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 102470 0.67 0.573535
Target:  5'- gGGCUCCuacgcgcagcucucgGCGuGCuuCaUGGACGCCGc -3'
miRNA:   3'- gCCGAGG---------------CGCuCGugG-ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 137703 0.67 0.569661
Target:  5'- gGGCuUCCGCGuguGCAcgcCCUGccguCGCCGUa -3'
miRNA:   3'- gCCG-AGGCGCu--CGU---GGACcu--GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 65191 0.67 0.569661
Target:  5'- gCGGgUCCGCGAGCGCgCUGcGCGa-GUu -3'
miRNA:   3'- -GCCgAGGCGCUCGUG-GACcUGCggCA- -5'
29376 5' -62.6 NC_006151.1 + 69458 0.67 0.569661
Target:  5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 100488 0.67 0.569661
Target:  5'- gGGC-CUGCaGGCGCCcguguuccGGACGCUGUg -3'
miRNA:   3'- gCCGaGGCGcUCGUGGa-------CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 76043 0.67 0.568694
Target:  5'- gCGG-UCCGCGAGCcggcCCUcguagagcgugaaGGGCGCCa- -3'
miRNA:   3'- -GCCgAGGCGCUCGu---GGA-------------CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 59353 0.67 0.560006
Target:  5'- aGGg-CCGCGcGCACg-GGGCGCCGc -3'
miRNA:   3'- gCCgaGGCGCuCGUGgaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 81546 0.67 0.560006
Target:  5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3'
miRNA:   3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 113206 0.67 0.560006
Target:  5'- aCGGacgCCGCcgagGAGCGCC-GGcaccGCGCCGUg -3'
miRNA:   3'- -GCCga-GGCG----CUCGUGGaCC----UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 119022 0.67 0.560006
Target:  5'- cCGuGCUCUccgagGCGGGCGCCaaGGACGgCGg -3'
miRNA:   3'- -GC-CGAGG-----CGCUCGUGGa-CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 130928 0.67 0.560006
Target:  5'- gGGC-CCGCGGGgGCggGGGCGgCGg -3'
miRNA:   3'- gCCGaGGCGCUCgUGgaCCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 2105 0.67 0.560006
Target:  5'- cCGaGCgggCCGCGGGgccggccgucgcCGCCgcGGACGCCGa -3'
miRNA:   3'- -GC-CGa--GGCGCUC------------GUGGa-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 78042 0.67 0.560006
Target:  5'- cCGGCgaCGCGGcGCAUCUGGGCGaCGc -3'
miRNA:   3'- -GCCGagGCGCU-CGUGGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 68850 0.67 0.559043
Target:  5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3'
miRNA:   3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 56129 0.67 0.559043
Target:  5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3'
miRNA:   3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 98395 0.67 0.557118
Target:  5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3'
miRNA:   3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 90955 0.67 0.554235
Target:  5'- gGGCUCCGUcgcgccgaccgcgucGAcGC-CCUGG-CGCCGc -3'
miRNA:   3'- gCCGAGGCG---------------CU-CGuGGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 64429 0.67 0.550397
Target:  5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3'
miRNA:   3'- gcCGAGGCGCuCGUGgACCuGCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.