miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 129041 0.68 0.676982
Target:  5'- cGCGUACAcCUCGCG-GUGcGGCUCCGc -3'
miRNA:   3'- -UGCAUGUuGGGCGCgCAC-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 50855 0.68 0.656784
Target:  5'- gGCGgcCGcccuCCCGCGCccccGGACCCCGu -3'
miRNA:   3'- -UGCauGUu---GGGCGCGca--CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 106265 0.68 0.676982
Target:  5'- cUGUuCAACUuuaCGCGCGUGGACCUg-- -3'
miRNA:   3'- uGCAuGUUGG---GCGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 59121 0.68 0.676982
Target:  5'- gGCGUACAgcuGCCgGUGgGUGGcGCCCgCGGg -3'
miRNA:   3'- -UGCAUGU---UGGgCGCgCACC-UGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 100854 0.68 0.666897
Target:  5'- aGCGU-CAACgUGCGCGacUGGGCCgCCGu -3'
miRNA:   3'- -UGCAuGUUGgGCGCGC--ACCUGG-GGUu -5'
29378 3' -58.8 NC_006151.1 + 3931 0.68 0.666897
Target:  5'- aGCGgggGCAGgCCGgGCGcGGGCUCCGc -3'
miRNA:   3'- -UGCa--UGUUgGGCgCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 117789 0.68 0.656784
Target:  5'- gGCGggGCGccacGCCCG-GCGgggcgGGGCCCCAc -3'
miRNA:   3'- -UGCa-UGU----UGGGCgCGCa----CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 114334 0.68 0.626362
Target:  5'- cUGcGCGACgUGCGCGUgcucuucuucgaGGACCCCGAc -3'
miRNA:   3'- uGCaUGUUGgGCGCGCA------------CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 128190 0.68 0.626362
Target:  5'- gGCGaGCGugCCGCGCuccaUGGcGCCCCAn -3'
miRNA:   3'- -UGCaUGUugGGCGCGc---ACC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 5111 0.68 0.646652
Target:  5'- gACGgugGCGGCCCgGCGCGggcgagugGGGCgCCGGg -3'
miRNA:   3'- -UGCa--UGUUGGG-CGCGCa-------CCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 4028 0.68 0.646652
Target:  5'- gGCGUagguccagGCGGCCuCGCggGCGcGGGCCCCGu -3'
miRNA:   3'- -UGCA--------UGUUGG-GCG--CGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 121770 0.68 0.646652
Target:  5'- aGCGcUGCGAcCCCGCG-GUGGugcgcgagcugGCCCCAc -3'
miRNA:   3'- -UGC-AUGUU-GGGCGCgCACC-----------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 33963 0.68 0.646652
Target:  5'- gGCGggacGCGgcGCCCGCGCGgGGAcacucuuucCCCCGGa -3'
miRNA:   3'- -UGCa---UGU--UGGGCGCGCaCCU---------GGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 102528 0.68 0.64361
Target:  5'- gGCGUcuACGACCagacggugguggcgCGCGCGcGGGCCCUg- -3'
miRNA:   3'- -UGCA--UGUUGG--------------GCGCGCaCCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 107250 0.68 0.636509
Target:  5'- cAUGgGCGACgCC-CGCGUGGACCCg-- -3'
miRNA:   3'- -UGCaUGUUG-GGcGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 136406 0.68 0.626362
Target:  5'- cUGaGCGGCUaCGCGCG-GGGCCCCGc -3'
miRNA:   3'- uGCaUGUUGG-GCGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 20704 0.67 0.687031
Target:  5'- cACGUACGACCC-CGCGUccggcgGGGCCg--- -3'
miRNA:   3'- -UGCAUGUUGGGcGCGCA------CCUGGgguu -5'
29378 3' -58.8 NC_006151.1 + 58493 0.67 0.687031
Target:  5'- cACGUGgAugauGCCCGCGCGcGGGCCggCCu- -3'
miRNA:   3'- -UGCAUgU----UGGGCGCGCaCCUGG--GGuu -5'
29378 3' -58.8 NC_006151.1 + 103298 0.67 0.687031
Target:  5'- cGCGcGCGGCUCGCGCGgcgcGACgCCGAg -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCac--CUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 134827 0.67 0.736429
Target:  5'- nACGgugGCGACCgCGCGCGcacacacgcgGGGCCCg-- -3'
miRNA:   3'- -UGCa--UGUUGG-GCGCGCa---------CCUGGGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.