miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 59197 0.7 0.526289
Target:  5'- uUGcGCAGguucuUCaCGCGCGUGGGCCCCGGg -3'
miRNA:   3'- uGCaUGUU-----GG-GCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 124672 0.71 0.49733
Target:  5'- --cUACGGCCUGCGCGaggGGGCCCaCGGg -3'
miRNA:   3'- ugcAUGUUGGGCGCGCa--CCUGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 135884 0.71 0.48689
Target:  5'- cGCGUGCGGCCCGUGUucGUcgccgccGcGACCCCGg -3'
miRNA:   3'- -UGCAUGUUGGGCGCG--CA-------C-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 69630 0.71 0.478426
Target:  5'- cGCGgucgGCGuCCCGCGCGUGcGGCgCCGc -3'
miRNA:   3'- -UGCa---UGUuGGGCGCGCAC-CUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 129781 0.71 0.478426
Target:  5'- gGCGUcGCu-CCCGCcgGCGUGGGCCCgCAu -3'
miRNA:   3'- -UGCA-UGuuGGGCG--CGCACCUGGG-GUu -5'
29378 3' -58.8 NC_006151.1 + 128220 0.71 0.478426
Target:  5'- gGCGUGCGACgaGCuCGUGGGCgCCAGg -3'
miRNA:   3'- -UGCAUGUUGggCGcGCACCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 106891 0.71 0.469108
Target:  5'- cUGUGCGACCUGCGCG---ACCCCGc -3'
miRNA:   3'- uGCAUGUUGGGCGCGCaccUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 113292 0.71 0.469108
Target:  5'- gGCGUACGcgcgcuaCCGCGCgGUGGACgCCAc -3'
miRNA:   3'- -UGCAUGUug-----GGCGCG-CACCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 114421 0.71 0.459883
Target:  5'- cACGUGCAcCaCCGCGUGcUGGACCgCCu- -3'
miRNA:   3'- -UGCAUGUuG-GGCGCGC-ACCUGG-GGuu -5'
29378 3' -58.8 NC_006151.1 + 82126 0.72 0.432805
Target:  5'- cACGUggaaGCGGCCCGCGgGcGGGCCCg-- -3'
miRNA:   3'- -UGCA----UGUUGGGCGCgCaCCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 133157 0.72 0.432805
Target:  5'- gGCG-GCGGCgCGgGCGUGGGCCUCGg -3'
miRNA:   3'- -UGCaUGUUGgGCgCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 72021 0.72 0.415277
Target:  5'- cACGUcgGCGcCCCGCGCG-GGcGCCCCGc -3'
miRNA:   3'- -UGCA--UGUuGGGCGCGCaCC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 102491 0.72 0.415277
Target:  5'- gGCGUGCuucaugGACgCCGCgGCGcgGGACCCCGg -3'
miRNA:   3'- -UGCAUG------UUG-GGCG-CGCa-CCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 130534 0.72 0.414412
Target:  5'- cGCGUACAcgccCCCGCGCGaGGgcggcgcgcugccGCCCCAc -3'
miRNA:   3'- -UGCAUGUu---GGGCGCGCaCC-------------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 115595 0.72 0.406678
Target:  5'- uCGaGCAGCUCGCGCGUGG-CCCa-- -3'
miRNA:   3'- uGCaUGUUGGGCGCGCACCuGGGguu -5'
29378 3' -58.8 NC_006151.1 + 134804 0.73 0.381564
Target:  5'- cGCG-GCGGCCCGCGCc-GGACCCgGAc -3'
miRNA:   3'- -UGCaUGUUGGGCGCGcaCCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 50016 0.73 0.373425
Target:  5'- cGCGcGCGGCCCGCGCG-GcGcCCCCGGg -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCaC-CuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 15323 0.73 0.357505
Target:  5'- gACGUcuACGACCCGCGCGUccucuCCCCGc -3'
miRNA:   3'- -UGCA--UGUUGGGCGCGCAccu--GGGGUu -5'
29378 3' -58.8 NC_006151.1 + 128606 0.74 0.342067
Target:  5'- cGCGcGCcACCCGCgGCGUGcGCCCCAGg -3'
miRNA:   3'- -UGCaUGuUGGGCG-CGCACcUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 32871 0.74 0.312655
Target:  5'- -aGgccCGACCCGCGCGggGGGCCCCc- -3'
miRNA:   3'- ugCau-GUUGGGCGCGCa-CCUGGGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.