miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 4028 0.68 0.646652
Target:  5'- gGCGUagguccagGCGGCCuCGCggGCGcGGGCCCCGu -3'
miRNA:   3'- -UGCA--------UGUUGG-GCG--CGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 5111 0.68 0.646652
Target:  5'- gACGgugGCGGCCCgGCGCGggcgagugGGGCgCCGGg -3'
miRNA:   3'- -UGCa--UGUUGGG-CGCGCa-------CCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 30921 0.68 0.646652
Target:  5'- cGCGgGCGGCCCGCGCGgaucGCCCg-- -3'
miRNA:   3'- -UGCaUGUUGGGCGCGCacc-UGGGguu -5'
29378 3' -58.8 NC_006151.1 + 102528 0.68 0.64361
Target:  5'- gGCGUcuACGACCagacggugguggcgCGCGCGcGGGCCCUg- -3'
miRNA:   3'- -UGCA--UGUUGG--------------GCGCGCaCCUGGGGuu -5'
29378 3' -58.8 NC_006151.1 + 107250 0.68 0.636509
Target:  5'- cAUGgGCGACgCC-CGCGUGGACCCg-- -3'
miRNA:   3'- -UGCaUGUUG-GGcGCGCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 114334 0.68 0.626362
Target:  5'- cUGcGCGACgUGCGCGUgcucuucuucgaGGACCCCGAc -3'
miRNA:   3'- uGCaUGUUGgGCGCGCA------------CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 128190 0.68 0.626362
Target:  5'- gGCGaGCGugCCGCGCuccaUGGcGCCCCAn -3'
miRNA:   3'- -UGCaUGUugGGCGCGc---ACC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 136406 0.68 0.626362
Target:  5'- cUGaGCGGCUaCGCGCG-GGGCCCCGc -3'
miRNA:   3'- uGCaUGUUGG-GCGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 134753 0.69 0.61622
Target:  5'- cCGaGCAGCgCGCGCG-GGGCCCgCGg -3'
miRNA:   3'- uGCaUGUUGgGCGCGCaCCUGGG-GUu -5'
29378 3' -58.8 NC_006151.1 + 82600 0.69 0.61622
Target:  5'- gACGaACAggguggGCCCGCGCGcGGGCgCCGc -3'
miRNA:   3'- -UGCaUGU------UGGGCGCGCaCCUGgGGUu -5'
29378 3' -58.8 NC_006151.1 + 66552 0.69 0.606089
Target:  5'- cGCGcGCGGCCgCGcCGcCGUGGACCCg-- -3'
miRNA:   3'- -UGCaUGUUGG-GC-GC-GCACCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 139006 0.69 0.595978
Target:  5'- ---cGCGACCUcCGCGaGGACCCCAu -3'
miRNA:   3'- ugcaUGUUGGGcGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 68627 0.69 0.595978
Target:  5'- cGCGaACuGCCCGCGCGUcgccGGCUCCAc -3'
miRNA:   3'- -UGCaUGuUGGGCGCGCAc---CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 117224 0.69 0.595978
Target:  5'- gGCGUcgACGACgCGCGCGUccacgucggcGGGCCCgAGg -3'
miRNA:   3'- -UGCA--UGUUGgGCGCGCA----------CCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 83001 0.69 0.585892
Target:  5'- cACGgccGCGGCgcagaCGCGCGgcgaGGGCCCCAGg -3'
miRNA:   3'- -UGCa--UGUUGg----GCGCGCa---CCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 125183 0.69 0.57584
Target:  5'- aGCGccuCGGCCUcgccgGCGuCGUGGGCCCCGc -3'
miRNA:   3'- -UGCau-GUUGGG-----CGC-GCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 99619 0.69 0.565827
Target:  5'- gGCGcACAGCgCCGCGCGcGaGGCCCuCAAc -3'
miRNA:   3'- -UGCaUGUUG-GGCGCGCaC-CUGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 77506 0.7 0.542979
Target:  5'- uACGUGCGcacggagcuggcgcGCcucggCCGCGCGUGGgccGCCCCGc -3'
miRNA:   3'- -UGCAUGU--------------UG-----GGCGCGCACC---UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 67299 0.7 0.526289
Target:  5'- ---cGCGACgCGCGCGUGGACCacguCAAg -3'
miRNA:   3'- ugcaUGUUGgGCGCGCACCUGGg---GUU- -5'
29378 3' -58.8 NC_006151.1 + 59197 0.7 0.526289
Target:  5'- uUGcGCAGguucuUCaCGCGCGUGGGCCCCGGg -3'
miRNA:   3'- uGCaUGUU-----GG-GCGCGCACCUGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.