miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 5' -63.9 NC_006151.1 + 50871 0.66 0.574362
Target:  5'- cGCCcccGGACCCCGUcccGGGGCcgGC-CgCGc -3'
miRNA:   3'- -CGGa--CCUGGGGCG---CCCCGa-CGaGaGC- -5'
29378 5' -63.9 NC_006151.1 + 140190 0.66 0.568602
Target:  5'- -gCUGGACCCCaucguggccaccGCGGGGgcggugcugcagaacCUGCgccugaagCUCGg -3'
miRNA:   3'- cgGACCUGGGG------------CGCCCC---------------GACGa-------GAGC- -5'
29378 5' -63.9 NC_006151.1 + 5870 0.66 0.56477
Target:  5'- cGCCcgGGGCCgCCG-GGGGCcccgGC-CUCu -3'
miRNA:   3'- -CGGa-CCUGG-GGCgCCCCGa---CGaGAGc -5'
29378 5' -63.9 NC_006151.1 + 5359 0.66 0.555221
Target:  5'- uCCggcGcGGCgCCgGCGGGGCUGuCUCUgCGg -3'
miRNA:   3'- cGGa--C-CUG-GGgCGCCCCGAC-GAGA-GC- -5'
29378 5' -63.9 NC_006151.1 + 138581 0.66 0.555221
Target:  5'- cGCCUGccccACCCCgucguguacGCGGcGCUGCcgCUCGg -3'
miRNA:   3'- -CGGACc---UGGGG---------CGCCcCGACGa-GAGC- -5'
29378 5' -63.9 NC_006151.1 + 3941 0.66 0.544773
Target:  5'- gGCCgggcgcGGGCUCCGCGGGcccgggccgcgcgGCgGC-CUCGg -3'
miRNA:   3'- -CGGa-----CCUGGGGCGCCC-------------CGaCGaGAGC- -5'
29378 5' -63.9 NC_006151.1 + 136403 0.66 0.540045
Target:  5'- uGCCUgagcggcuacgcgcgGGGCCCCGCGGcGGCgcacgccgcgcGCUacgUCGa -3'
miRNA:   3'- -CGGA---------------CCUGGGGCGCC-CCGa----------CGAg--AGC- -5'
29378 5' -63.9 NC_006151.1 + 39263 0.66 0.536272
Target:  5'- cGCCUcaacGCCCaGgGGGugcuGCUGCUCUCGg -3'
miRNA:   3'- -CGGAcc--UGGGgCgCCC----CGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 125202 0.66 0.535331
Target:  5'- cGUCgUGGGCCCCGCGGcccccgcGGCcGCcCgUCGg -3'
miRNA:   3'- -CGG-ACCUGGGGCGCC-------CCGaCGaG-AGC- -5'
29378 5' -63.9 NC_006151.1 + 18751 0.66 0.517553
Target:  5'- cGCCgGGGCCCCaCGGGG-UGC-C-CGg -3'
miRNA:   3'- -CGGaCCUGGGGcGCCCCgACGaGaGC- -5'
29378 5' -63.9 NC_006151.1 + 98343 0.66 0.517553
Target:  5'- gGCCgcgaGACgCCCGCGGGcGUgcgcggGCUCUgGg -3'
miRNA:   3'- -CGGac--CUG-GGGCGCCC-CGa-----CGAGAgC- -5'
29378 5' -63.9 NC_006151.1 + 106549 0.67 0.509214
Target:  5'- -gCUGGcgcgcaugugcauccCCCCGC--GGCUGCUCUCGg -3'
miRNA:   3'- cgGACCu--------------GGGGCGccCCGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 63815 0.67 0.508291
Target:  5'- cGCC-GGGCCCC--GGGGC-GCcCUCGa -3'
miRNA:   3'- -CGGaCCUGGGGcgCCCCGaCGaGAGC- -5'
29378 5' -63.9 NC_006151.1 + 121770 0.67 0.508291
Target:  5'- aGCgCUGcGACCCCGCGGuGG-UGCg--CGa -3'
miRNA:   3'- -CG-GAC-CUGGGGCGCC-CCgACGagaGC- -5'
29378 5' -63.9 NC_006151.1 + 131503 0.67 0.502768
Target:  5'- aCCaGGAgcCCCgCGCGGGggaacggcuggaagcGCUGCUCUUGc -3'
miRNA:   3'- cGGaCCU--GGG-GCGCCC---------------CGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 5531 0.67 0.4991
Target:  5'- gGCCgaGGaucgagccGCCUCGCGGcGGCggGCUCgUCGa -3'
miRNA:   3'- -CGGa-CC--------UGGGGCGCC-CCGa-CGAG-AGC- -5'
29378 5' -63.9 NC_006151.1 + 136618 0.67 0.489984
Target:  5'- cGCCgucaacgucacGGACCCCGCggcgcccguGGGGC-GCUCgccccUCGg -3'
miRNA:   3'- -CGGa----------CCUGGGGCG---------CCCCGaCGAG-----AGC- -5'
29378 5' -63.9 NC_006151.1 + 2281 0.67 0.489984
Target:  5'- gGCCggcgGGGCgCCCGCGGcGGCgacgGCgCcCGg -3'
miRNA:   3'- -CGGa---CCUG-GGGCGCC-CCGa---CGaGaGC- -5'
29378 5' -63.9 NC_006151.1 + 6849 0.67 0.480946
Target:  5'- uGCCcGGcCCCCGCGGcGGCca-UCUUGc -3'
miRNA:   3'- -CGGaCCuGGGGCGCC-CCGacgAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 102446 0.68 0.454337
Target:  5'- gGCgCUGGACgcgcucgagUCCG-GGGGCUccuacgcgcaGCUCUCGg -3'
miRNA:   3'- -CG-GACCUG---------GGGCgCCCCGA----------CGAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.