miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 5' -63.9 NC_006151.1 + 140190 0.66 0.568602
Target:  5'- -gCUGGACCCCaucguggccaccGCGGGGgcggugcugcagaacCUGCgccugaagCUCGg -3'
miRNA:   3'- cgGACCUGGGG------------CGCCCC---------------GACGa-------GAGC- -5'
29378 5' -63.9 NC_006151.1 + 138581 0.66 0.555221
Target:  5'- cGCCUGccccACCCCgucguguacGCGGcGCUGCcgCUCGg -3'
miRNA:   3'- -CGGACc---UGGGG---------CGCCcCGACGa-GAGC- -5'
29378 5' -63.9 NC_006151.1 + 137269 0.7 0.341887
Target:  5'- cGCCcGGugCCCGCGGGcacGCUCgaggCGg -3'
miRNA:   3'- -CGGaCCugGGGCGCCCcgaCGAGa---GC- -5'
29378 5' -63.9 NC_006151.1 + 136618 0.67 0.489984
Target:  5'- cGCCgucaacgucacGGACCCCGCggcgcccguGGGGC-GCUCgccccUCGg -3'
miRNA:   3'- -CGGa----------CCUGGGGCG---------CCCCGaCGAG-----AGC- -5'
29378 5' -63.9 NC_006151.1 + 136403 0.66 0.540045
Target:  5'- uGCCUgagcggcuacgcgcgGGGCCCCGCGGcGGCgcacgccgcgcGCUacgUCGa -3'
miRNA:   3'- -CGGA---------------CCUGGGGCGCC-CCGa----------CGAg--AGC- -5'
29378 5' -63.9 NC_006151.1 + 136352 1.09 0.000579
Target:  5'- gGCCUGGACCCCGCGGGGCUGCUCUCGu -3'
miRNA:   3'- -CGGACCUGGGGCGCCCCGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 131503 0.67 0.502768
Target:  5'- aCCaGGAgcCCCgCGCGGGggaacggcuggaagcGCUGCUCUUGc -3'
miRNA:   3'- cGGaCCU--GGG-GCGCCC---------------CGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 130654 0.68 0.443056
Target:  5'- cGCCUGcggcgugaacgucaGugCCCGCGGGGCgcgGCg--Ca -3'
miRNA:   3'- -CGGAC--------------CugGGGCGCCCCGa--CGagaGc -5'
29378 5' -63.9 NC_006151.1 + 127402 0.74 0.172463
Target:  5'- gGCCgagucgacgGGAgCCCGCGGGGUcGC-CUCGg -3'
miRNA:   3'- -CGGa--------CCUgGGGCGCCCCGaCGaGAGC- -5'
29378 5' -63.9 NC_006151.1 + 125202 0.66 0.535331
Target:  5'- cGUCgUGGGCCCCGCGGcccccgcGGCcGCcCgUCGg -3'
miRNA:   3'- -CGG-ACCUGGGGCGCC-------CCGaCGaG-AGC- -5'
29378 5' -63.9 NC_006151.1 + 121770 0.67 0.508291
Target:  5'- aGCgCUGcGACCCCGCGGuGG-UGCg--CGa -3'
miRNA:   3'- -CG-GAC-CUGGGGCGCC-CCgACGagaGC- -5'
29378 5' -63.9 NC_006151.1 + 121406 0.68 0.411014
Target:  5'- gGCCUgcggcgcgggcggGGACgUCGCGGGGCUcGCgccggcCUCGc -3'
miRNA:   3'- -CGGA-------------CCUGgGGCGCCCCGA-CGa-----GAGC- -5'
29378 5' -63.9 NC_006151.1 + 107207 0.72 0.245292
Target:  5'- uGCCggagaUGGACCCCGCGGacccGCUGUUCa-- -3'
miRNA:   3'- -CGG-----ACCUGGGGCGCCc---CGACGAGagc -5'
29378 5' -63.9 NC_006151.1 + 106996 0.68 0.411838
Target:  5'- uGCCUGG-CgCCGCagcuGGaGCgGCUCUCGg -3'
miRNA:   3'- -CGGACCuGgGGCGc---CC-CGaCGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 106783 0.81 0.065288
Target:  5'- cGCCUGGACCuggCCGCGGcGGCggUGCUCgUCGg -3'
miRNA:   3'- -CGGACCUGG---GGCGCC-CCG--ACGAG-AGC- -5'
29378 5' -63.9 NC_006151.1 + 106646 0.74 0.184851
Target:  5'- cGCCUGGACgCCGCGGcgcacgugcgcgaGGCcGCggcgCUCGg -3'
miRNA:   3'- -CGGACCUGgGGCGCC-------------CCGaCGa---GAGC- -5'
29378 5' -63.9 NC_006151.1 + 106549 0.67 0.509214
Target:  5'- -gCUGGcgcgcaugugcauccCCCCGC--GGCUGCUCUCGg -3'
miRNA:   3'- cgGACCu--------------GGGGCGccCCGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 103420 0.7 0.341887
Target:  5'- -gCUGGGCCCgGCGGuGGacCUGCUCgCGc -3'
miRNA:   3'- cgGACCUGGGgCGCC-CC--GACGAGaGC- -5'
29378 5' -63.9 NC_006151.1 + 102446 0.68 0.454337
Target:  5'- gGCgCUGGACgcgcucgagUCCG-GGGGCUccuacgcgcaGCUCUCGg -3'
miRNA:   3'- -CG-GACCUG---------GGGCgCCCCGA----------CGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 98343 0.66 0.517553
Target:  5'- gGCCgcgaGACgCCCGCGGGcGUgcgcggGCUCUgGg -3'
miRNA:   3'- -CGGac--CUG-GGGCGCCC-CGa-----CGAGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.