Results 61 - 80 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 64904 | 0.67 | 0.530584 |
Target: 5'- cACGCaGcGGCGcGCgagCa-CCUCCACGGCg -3' miRNA: 3'- aUGCG-C-CCGU-CGa--GgaGGAGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 57990 | 0.67 | 0.530584 |
Target: 5'- aGCGCGccGCGGaccgCCUCCggcgcggCCGCGGCc -3' miRNA: 3'- aUGCGCc-CGUCga--GGAGGa------GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 20835 | 0.67 | 0.530584 |
Target: 5'- cGCGgGGGCAGaggUCguaCUCgGCGGCg -3' miRNA: 3'- aUGCgCCCGUCga-GGag-GAGgUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 51067 | 0.67 | 0.549911 |
Target: 5'- -gUGauGGCGGCggCCUCCUCCGCucGCc -3' miRNA: 3'- auGCgcCCGUCGa-GGAGGAGGUGc-CG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 112810 | 0.67 | 0.549911 |
Target: 5'- cGCGCGucgcuGCAGCgcgCCUUCgCCACGcGCg -3' miRNA: 3'- aUGCGCc----CGUCGa--GGAGGaGGUGC-CG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 118434 | 0.67 | 0.549911 |
Target: 5'- gGCGCGGaggugugcgcGCGGCUCggCCUggCCGCGGa -3' miRNA: 3'- aUGCGCC----------CGUCGAGgaGGA--GGUGCCg -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 8296 | 0.67 | 0.579286 |
Target: 5'- cGCGCGGGCGccgcgucccGCcCCgagCCcCCGgGGCg -3' miRNA: 3'- aUGCGCCCGU---------CGaGGa--GGaGGUgCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 83658 | 0.67 | 0.569451 |
Target: 5'- gACGaGGGCcGCgUCCUCCUCgCucaGGCu -3' miRNA: 3'- aUGCgCCCGuCG-AGGAGGAG-Gug-CCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 128757 | 0.67 | 0.569451 |
Target: 5'- --aGCGGGCgcauguaguaGGCguaCCg-CUCCACGGCc -3' miRNA: 3'- augCGCCCG----------UCGa--GGagGAGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 137614 | 0.67 | 0.568469 |
Target: 5'- gGCGCGGGCggggaccccGGCgCCUCCgcccucgUCCGCgcccccgucccGGCg -3' miRNA: 3'- aUGCGCCCG---------UCGaGGAGG-------AGGUG-----------CCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 97605 | 0.67 | 0.559658 |
Target: 5'- cACGCGGGCAcguGCaCCUgCga-GCGGCg -3' miRNA: 3'- aUGCGCCCGU---CGaGGAgGaggUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 101711 | 0.67 | 0.559658 |
Target: 5'- --aGCGGGCGGUgcCCUCCgugcacCCgAUGGCc -3' miRNA: 3'- augCGCCCGUCGa-GGAGGa-----GG-UGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 9395 | 0.67 | 0.558681 |
Target: 5'- cGCGCGGGUcgGGCcuUCUUCC-CCAuccccgcCGGCc -3' miRNA: 3'- aUGCGCCCG--UCG--AGGAGGaGGU-------GCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 19304 | 0.67 | 0.553804 |
Target: 5'- gGCGCGGGCGGCcggucgCCcaccgCCacaaagaacacggcCCGCGGCc -3' miRNA: 3'- aUGCGCCCGUCGa-----GGa----GGa-------------GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 106204 | 0.67 | 0.550884 |
Target: 5'- --gGCGGuGCGGCUcgcCCUCCccgaccugaugguggCCGCGGUg -3' miRNA: 3'- augCGCC-CGUCGA---GGAGGa--------------GGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 136671 | 0.67 | 0.549911 |
Target: 5'- aGCGCGcGGCcGCcgccuUCUUCCgCCACGuGCg -3' miRNA: 3'- aUGCGC-CCGuCG-----AGGAGGaGGUGC-CG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 18181 | 0.67 | 0.549911 |
Target: 5'- aAUGCGGGCGGg-CCggUUCUCC-CGGUa -3' miRNA: 3'- aUGCGCCCGUCgaGG--AGGAGGuGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 101459 | 0.68 | 0.521013 |
Target: 5'- -cCGUGGGCcugGGcCUCUaCCgCCGCGGCg -3' miRNA: 3'- auGCGCCCG---UC-GAGGaGGaGGUGCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 100765 | 0.68 | 0.521013 |
Target: 5'- cUGCGCGaGGCcGCggaCCgCgUCCugGGCg -3' miRNA: 3'- -AUGCGC-CCGuCGa--GGaGgAGGugCCG- -5' |
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29381 | 5' | -61.8 | NC_006151.1 | + | 82655 | 0.68 | 0.521013 |
Target: 5'- gGCGaGGGCGGC-CCaCC-CUGCGGCg -3' miRNA: 3'- aUGCgCCCGUCGaGGaGGaGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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