Results 61 - 80 of 180 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 18696 | 0.69 | 0.454368 |
Target: 5'- cGCGCGGGCGGCgCCggcgucgugacgCCgUCCACGu- -3' miRNA: 3'- aUGCGCCCGUCGaGGa-----------GG-AGGUGCcg -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 71591 | 0.69 | 0.456158 |
Target: 5'- -cCGCGGGCGccGCgucgucacaCCUCCaccaCCGCGGCc -3' miRNA: 3'- auGCGCCCGU--CGa--------GGAGGa---GGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 136363 | 0.69 | 0.456158 |
Target: 5'- cGCG-GGGCuGCU-CUCgUUCGCGGCg -3' miRNA: 3'- aUGCgCCCGuCGAgGAGgAGGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 129236 | 0.69 | 0.456158 |
Target: 5'- gGCGCGGGU-GCgCC-CCUCggugaCGCGGCg -3' miRNA: 3'- aUGCGCCCGuCGaGGaGGAG-----GUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 3946 | 0.69 | 0.456158 |
Target: 5'- gGCGCGGGCuccgcgGGC-CCgggCCg-CGCGGCg -3' miRNA: 3'- aUGCGCCCG------UCGaGGa--GGagGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 64674 | 0.69 | 0.456158 |
Target: 5'- cGCGCGGcCAGCUCCUCaggCagcgaguuCGGCa -3' miRNA: 3'- aUGCGCCcGUCGAGGAGga-Ggu------GCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 69144 | 0.69 | 0.462454 |
Target: 5'- cGCGCGGGUGcucgacgccgugccGCUCgcaCUCCUCgGCGaGCa -3' miRNA: 3'- aUGCGCCCGU--------------CGAG---GAGGAGgUGC-CG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 72034 | 0.69 | 0.465166 |
Target: 5'- cGCGCGGGC-GCcccgCCgcgcagcgUCUCgGCGGCg -3' miRNA: 3'- aUGCGCCCGuCGa---GGa-------GGAGgUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 58510 | 0.69 | 0.468795 |
Target: 5'- cGCGCGGGcCGGCcucgUCCUcguccuccucgccgcCCUCCcCGGUc -3' miRNA: 3'- aUGCGCCC-GUCG----AGGA---------------GGAGGuGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 97938 | 0.68 | 0.473352 |
Target: 5'- cGCGCccgcccucgucgaGGGCgAGCcacgCCUCCUCCaggucGCGGUg -3' miRNA: 3'- aUGCG-------------CCCG-UCGa---GGAGGAGG-----UGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 119070 | 0.68 | 0.474266 |
Target: 5'- -cCGCGGGCGcGCccgUCUCgCaggCCGCGGCg -3' miRNA: 3'- auGCGCCCGU-CGa--GGAG-Ga--GGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 58753 | 0.68 | 0.474266 |
Target: 5'- -cCGCGGccaccGCGGCcgCCgagCCcgUCCACGGCg -3' miRNA: 3'- auGCGCC-----CGUCGa-GGa--GG--AGGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 49217 | 0.68 | 0.474266 |
Target: 5'- gGCGCGGGgucccCGGCUCCcacgCC-CCGCucGGCu -3' miRNA: 3'- aUGCGCCC-----GUCGAGGa---GGaGGUG--CCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 10529 | 0.68 | 0.474266 |
Target: 5'- gGCGCGGGCGcCUCUccacgccccguUCCgCC-CGGCg -3' miRNA: 3'- aUGCGCCCGUcGAGG-----------AGGaGGuGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 78671 | 0.68 | 0.483454 |
Target: 5'- gGCGCGGGUgcuggacgGGCUCUacgCCggCCGgGGCc -3' miRNA: 3'- aUGCGCCCG--------UCGAGGa--GGa-GGUgCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 129284 | 0.68 | 0.483454 |
Target: 5'- aGCGCGGcGC-GUUCCUCgggCGCGGCg -3' miRNA: 3'- aUGCGCC-CGuCGAGGAGgagGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 133333 | 0.68 | 0.483454 |
Target: 5'- cGCGcCGGGCGGC-Cgg-UUCCGCGGCg -3' miRNA: 3'- aUGC-GCCCGUCGaGgagGAGGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 137432 | 0.68 | 0.483454 |
Target: 5'- -cCGCGGGg---UCCgCCUCCGCGGCc -3' miRNA: 3'- auGCGCCCgucgAGGaGGAGGUGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 37184 | 0.68 | 0.487153 |
Target: 5'- -cCGCGGccccGCGGCccucggCCUCCUCCgccuccuccuccgccGCGGCc -3' miRNA: 3'- auGCGCC----CGUCGa-----GGAGGAGG---------------UGCCG- -5' |
|||||||
29381 | 5' | -61.8 | NC_006151.1 | + | 15097 | 0.68 | 0.490865 |
Target: 5'- cACGCGGcGCcucggGGCcgacgugaaccgCCUCUUUCGCGGCa -3' miRNA: 3'- aUGCGCC-CG-----UCGa-----------GGAGGAGGUGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home