miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 50462 0.7 0.404193
Target:  5'- -cCGCGGGC-GCUCgCgCCagCGCGGCg -3'
miRNA:   3'- auGCGCCCGuCGAG-GaGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 51067 0.67 0.549911
Target:  5'- -gUGauGGCGGCggCCUCCUCCGCucGCc -3'
miRNA:   3'- auGCgcCCGUCGa-GGAGGAGGUGc-CG- -5'
29381 5' -61.8 NC_006151.1 + 53893 0.71 0.33073
Target:  5'- gUACGCggcgaaGGGCAGCUCCagcgccucuauaUCCaccggguuguccgCCGCGGCg -3'
miRNA:   3'- -AUGCG------CCCGUCGAGG------------AGGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 53963 0.71 0.348517
Target:  5'- cACGCcagcGGCGGCggcgCCUCCgcgggcgUCGCGGCg -3'
miRNA:   3'- aUGCGc---CCGUCGa---GGAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57153 0.66 0.61892
Target:  5'- gGCGgGGGCgagGGCgUCCcCCggCGCGGCc -3'
miRNA:   3'- aUGCgCCCG---UCG-AGGaGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57242 0.68 0.521013
Target:  5'- cGCGCGcGGCcucGGCgUCCgcgcggcCCUCgACGGCc -3'
miRNA:   3'- aUGCGC-CCG---UCG-AGGa------GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57504 0.71 0.359204
Target:  5'- cACGCGcucggccgcggcggcGGCGGCcgCCUCCggCGCGGCc -3'
miRNA:   3'- aUGCGC---------------CCGUCGa-GGAGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57951 0.68 0.492726
Target:  5'- aGCGCGGGCcacAGC-CCgUCCgugagCCgguggGCGGCg -3'
miRNA:   3'- aUGCGCCCG---UCGaGG-AGGa----GG-----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57990 0.67 0.530584
Target:  5'- aGCGCGccGCGGaccgCCUCCggcgcggCCGCGGCc -3'
miRNA:   3'- aUGCGCc-CGUCga--GGAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 58315 0.66 0.628869
Target:  5'- gGCGUuucaGcGGCGGCgcgCCggCCUCCGCguaGGCg -3'
miRNA:   3'- aUGCG----C-CCGUCGa--GGa-GGAGGUG---CCG- -5'
29381 5' -61.8 NC_006151.1 + 58510 0.69 0.468795
Target:  5'- cGCGCGGGcCGGCcucgUCCUcguccuccucgccgcCCUCCcCGGUc -3'
miRNA:   3'- aUGCGCCC-GUCG----AGGA---------------GGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 58753 0.68 0.474266
Target:  5'- -cCGCGGccaccGCGGCcgCCgagCCcgUCCACGGCg -3'
miRNA:   3'- auGCGCC-----CGUCGa-GGa--GG--AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 59147 0.66 0.615936
Target:  5'- -cCGCGGGCGGgUCCaggCCggcgucgcgcagcagCGCGGCg -3'
miRNA:   3'- auGCGCCCGUCgAGGa--GGag-------------GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64253 0.66 0.589156
Target:  5'- gGCGCGGGCcacGCU-CUCgUUgaCGCGGCc -3'
miRNA:   3'- aUGCGCCCGu--CGAgGAGgAG--GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64500 0.76 0.177613
Target:  5'- gGCGCGGGCGGCgggcgcgcgCCgccaaaggCCgCCGCGGCc -3'
miRNA:   3'- aUGCGCCCGUCGa--------GGa-------GGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64674 0.69 0.456158
Target:  5'- cGCGCGGcCAGCUCCUCaggCagcgaguuCGGCa -3'
miRNA:   3'- aUGCGCCcGUCGAGGAGga-Ggu------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 64821 0.72 0.28531
Target:  5'- --gGCGGcCAGCUCCUCCUCgAggaugucccCGGCg -3'
miRNA:   3'- augCGCCcGUCGAGGAGGAGgU---------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 64904 0.67 0.530584
Target:  5'- cACGCaGcGGCGcGCgagCa-CCUCCACGGCg -3'
miRNA:   3'- aUGCG-C-CCGU-CGa--GgaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 65501 0.81 0.071181
Target:  5'- gACGCcGGCggAGCgcgCCUCCUCCGCGGCc -3'
miRNA:   3'- aUGCGcCCG--UCGa--GGAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 65841 0.68 0.51151
Target:  5'- aGCGCGGccCGGCUcacgCCUCCUCCGCu-- -3'
miRNA:   3'- aUGCGCCc-GUCGA----GGAGGAGGUGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.