miRNA display CGI


Results 61 - 80 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 53254 0.74 0.183248
Target:  5'- cGCUGGCGCGCaCgCGGCA-CAGCuGCCGCg -3'
miRNA:   3'- -UGGCCGCGCG-G-GCUGUcGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 17112 0.74 0.183248
Target:  5'- cGCCGGgG-GCuCCGGCGGCGGUGCUGCg -3'
miRNA:   3'- -UGGCCgCgCG-GGCUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 81895 0.74 0.183248
Target:  5'- cGCCgaGGCGCGCCgGucGCGGC-GCGCCGCc -3'
miRNA:   3'- -UGG--CCGCGCGGgC--UGUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 139661 0.74 0.185032
Target:  5'- gGCgGGCGCGCCgcccgacaggcccugCGGCAGCGGCGgCgGCa -3'
miRNA:   3'- -UGgCCGCGCGG---------------GCUGUCGUCGU-GgUG- -5'
29382 3' -63.2 NC_006151.1 + 10641 0.74 0.18638
Target:  5'- uGCCGGCGCggcauccccGCCCaGGCGGCGggggagcgcggagcGCGCCGCc -3'
miRNA:   3'- -UGGCCGCG---------CGGG-CUGUCGU--------------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 71319 0.74 0.187737
Target:  5'- cACCGGCaaGCgCGGCGGCuGCGCCGa -3'
miRNA:   3'- -UGGCCGcgCGgGCUGUCGuCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 138327 0.74 0.192324
Target:  5'- uGCCuGCGgGCCCGGCAcgcgcGCAGC-CCGCc -3'
miRNA:   3'- -UGGcCGCgCGGGCUGU-----CGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 19013 0.74 0.192324
Target:  5'- aGCCGcGCGCGCgCCGGCgaGGUgaAGCugCACg -3'
miRNA:   3'- -UGGC-CGCGCG-GGCUG--UCG--UCGugGUG- -5'
29382 3' -63.2 NC_006151.1 + 57119 0.74 0.192324
Target:  5'- cGCCGcCGCGCCCGGCGGUcgccccuGCGCaCGCg -3'
miRNA:   3'- -UGGCcGCGCGGGCUGUCGu------CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 84755 0.74 0.195592
Target:  5'- -aCGGCGCGCgCCGccgaggaggcggacGCGGCGcGCGCCGCc -3'
miRNA:   3'- ugGCCGCGCG-GGC--------------UGUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 128398 0.74 0.197008
Target:  5'- -aCGGCG-GCCaCGACGGCGGCcgugagGCCGCa -3'
miRNA:   3'- ugGCCGCgCGG-GCUGUCGUCG------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 132110 0.74 0.197008
Target:  5'- gGCCGGCGCGCaCGAgCGGCAggcccagcucGCGCCGg -3'
miRNA:   3'- -UGGCCGCGCGgGCU-GUCGU----------CGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 59162 0.73 0.201791
Target:  5'- gGCCGGCGuCGC---GCAGCAGCGCgGCg -3'
miRNA:   3'- -UGGCCGC-GCGggcUGUCGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 115147 0.73 0.201791
Target:  5'- gGCCaGCacGCGCCCGAaGGCGGCgaaGCCGCg -3'
miRNA:   3'- -UGGcCG--CGCGGGCUgUCGUCG---UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 128542 0.73 0.201791
Target:  5'- -aCGGCGgGCCCGcCGGCgcGGUGCCGCc -3'
miRNA:   3'- ugGCCGCgCGGGCuGUCG--UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 36879 0.73 0.206182
Target:  5'- -gCGGgGCGCCCccgcagaGACAGCcccgccGGCGCCGCg -3'
miRNA:   3'- ugGCCgCGCGGG-------CUGUCG------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 55071 0.73 0.206675
Target:  5'- cCCGGCGgGCUCGGCcGCGGCGCg-- -3'
miRNA:   3'- uGGCCGCgCGGGCUGuCGUCGUGgug -5'
29382 3' -63.2 NC_006151.1 + 50434 0.73 0.206675
Target:  5'- cCCuGCGCG-CCGGCGGCcugGGCACCGCc -3'
miRNA:   3'- uGGcCGCGCgGGCUGUCG---UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 86581 0.73 0.206675
Target:  5'- cGCgGGCGCGCuCCGAgcugcUGGCGcGCGCCGCc -3'
miRNA:   3'- -UGgCCGCGCG-GGCU-----GUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 77519 0.73 0.206675
Target:  5'- aGCUGGCGCGCCuCGGCcGCGcGUggGCCGCc -3'
miRNA:   3'- -UGGCCGCGCGG-GCUGuCGU-CG--UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.