miRNA display CGI


Results 21 - 40 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 2367 0.66 0.567649
Target:  5'- cGCagaaGGCGCGCaacucggCCGGCAGgcccuCGGgGCCGCg -3'
miRNA:   3'- -UGg---CCGCGCG-------GGCUGUC-----GUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 101389 0.66 0.567649
Target:  5'- -aCGGCGCGCgccuucuUCGACGGCcucugGGCGCaGCg -3'
miRNA:   3'- ugGCCGCGCG-------GGCUGUCG-----UCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 49052 0.66 0.568623
Target:  5'- gGCUGGCcuucaGCGUCCGGCGcGgGGUGCCGa -3'
miRNA:   3'- -UGGCCG-----CGCGGGCUGU-CgUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 52084 0.66 0.568623
Target:  5'- uCCGucuGCaGCGCCguCGAgAGCAGCgcGCCGCg -3'
miRNA:   3'- uGGC---CG-CGCGG--GCUgUCGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 57535 0.66 0.568623
Target:  5'- uCCGGCGCGgCCGcgGGCAcGuCGCCGa -3'
miRNA:   3'- uGGCCGCGCgGGCugUCGU-C-GUGGUg -5'
29382 3' -63.2 NC_006151.1 + 63746 0.66 0.568623
Target:  5'- uCCGGCGCG-UCGGCGGggcguccuCGGCGCCcccGCg -3'
miRNA:   3'- uGGCCGCGCgGGCUGUC--------GUCGUGG---UG- -5'
29382 3' -63.2 NC_006151.1 + 67943 0.66 0.568623
Target:  5'- gGCC-GCGCGCCCaccacgcgccGGgGGcCAGgACCACg -3'
miRNA:   3'- -UGGcCGCGCGGG----------CUgUC-GUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 94041 0.66 0.568623
Target:  5'- cGCUcGCGCGCC--GCGGCGuCGCCGCg -3'
miRNA:   3'- -UGGcCGCGCGGgcUGUCGUcGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 113094 0.66 0.568623
Target:  5'- cGCCGcCGC-CaCCGGgGGCGGgGCCGCg -3'
miRNA:   3'- -UGGCcGCGcG-GGCUgUCGUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 4327 0.66 0.568623
Target:  5'- gGCCGG-GCuGCgCGGCGGCgaaGGCGgCGCg -3'
miRNA:   3'- -UGGCCgCG-CGgGCUGUCG---UCGUgGUG- -5'
29382 3' -63.2 NC_006151.1 + 39769 0.66 0.568623
Target:  5'- cGCgGGCGcCGCCUucgGGCAccgcGCGGCcaACCGCu -3'
miRNA:   3'- -UGgCCGC-GCGGG---CUGU----CGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 25342 0.66 0.568623
Target:  5'- gGCCGGCGUGCCgCGAUAuCA-CAUCGg -3'
miRNA:   3'- -UGGCCGCGCGG-GCUGUcGUcGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 112617 0.66 0.567649
Target:  5'- cGCUGGCGCuggacgaGCCCuGCcGCGuGUGCCGCa -3'
miRNA:   3'- -UGGCCGCG-------CGGGcUGuCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 62504 0.66 0.568623
Target:  5'- --aGGCGCggacgacgGCCCGGCGGUaccugcagaAGCGCCuGCa -3'
miRNA:   3'- uggCCGCG--------CGGGCUGUCG---------UCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 57498 0.66 0.568623
Target:  5'- gACgCGcacGCGCucgGCCgCGGCGGCGGCgGCCGCc -3'
miRNA:   3'- -UG-GC---CGCG---CGG-GCUGUCGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 67839 0.66 0.568623
Target:  5'- cGCgGGgGCucagcaGCCCGGCgAGcCGGCGCCGa -3'
miRNA:   3'- -UGgCCgCG------CGGGCUG-UC-GUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 69055 0.66 0.568623
Target:  5'- gACCGGCaGCGgcggcuccucguCCCc-CAGCGGCACgGCc -3'
miRNA:   3'- -UGGCCG-CGC------------GGGcuGUCGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 87009 0.66 0.568623
Target:  5'- cCCGGCcC-CCCGcCAGgaAGCGCCGCu -3'
miRNA:   3'- uGGCCGcGcGGGCuGUCg-UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 129737 0.66 0.568623
Target:  5'- cGCgGGCcCGCgaGGCGcuGCAGCACCAg -3'
miRNA:   3'- -UGgCCGcGCGggCUGU--CGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 7659 0.66 0.568623
Target:  5'- cGCuCGGCGCGCgcuCCGAgGGC-GCcCCAg -3'
miRNA:   3'- -UG-GCCGCGCG---GGCUgUCGuCGuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.