miRNA display CGI


Results 41 - 60 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 26351 0.67 0.80916
Target:  5'- gGGGCGGCGgCGGGccGcGucGGGGCGCGc -3'
miRNA:   3'- -CUUGUCGUgGCCCa-C-CuuCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 11806 0.67 0.80916
Target:  5'- gGGGCGGggUgGGGUGGggGGcGGCGgCGg -3'
miRNA:   3'- -CUUGUCguGgCCCACCuuCU-CCGU-GC- -5'
29382 5' -56.5 NC_006151.1 + 73820 0.67 0.80025
Target:  5'- -cAUGGCGCCGaGGUGGucggcgcaggcaAAGAGGCguucACGg -3'
miRNA:   3'- cuUGUCGUGGC-CCACC------------UUCUCCG----UGC- -5'
29382 5' -56.5 NC_006151.1 + 26289 0.67 0.80025
Target:  5'- cGGACGGUg--GGGUGGggGGGGUggGg -3'
miRNA:   3'- -CUUGUCGuggCCCACCuuCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 132122 0.67 0.79935
Target:  5'- cGAGCGGCaggcccagcucgcGCCGgcGGUGGuuGAcGGCGCGc -3'
miRNA:   3'- -CUUGUCG-------------UGGC--CCACCuuCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 23013 0.68 0.791187
Target:  5'- uGGgGGCGCgGgGGUGGuGGAGGCgGCGa -3'
miRNA:   3'- cUUgUCGUGgC-CCACCuUCUCCG-UGC- -5'
29382 5' -56.5 NC_006151.1 + 27940 0.68 0.791187
Target:  5'- uGAGCcgaucGCGCgGGGUGGGgagggaGGGGGgACGg -3'
miRNA:   3'- -CUUGu----CGUGgCCCACCU------UCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 139639 0.68 0.790273
Target:  5'- --cCGGCGCCGGcGcGGggGucgcggcGGGCGCGc -3'
miRNA:   3'- cuuGUCGUGGCC-CaCCuuC-------UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 112055 0.68 0.772637
Target:  5'- cGGGCGGCGgCGguGGUGGu-GGGGCugGu -3'
miRNA:   3'- -CUUGUCGUgGC--CCACCuuCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 5028 0.68 0.772637
Target:  5'- --cCGGgGCCGGGgccGggGAGGcCGCGg -3'
miRNA:   3'- cuuGUCgUGGCCCac-CuuCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 54148 0.68 0.752616
Target:  5'- cGGCGGCGCCGcGGaGGAGGcuaauaaccuguuGGGCGCc -3'
miRNA:   3'- cUUGUCGUGGC-CCaCCUUC-------------UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 5364 0.69 0.743887
Target:  5'- -cGCGGCGCCGGcG-GGGcugucucugcGGGGGCGCc -3'
miRNA:   3'- cuUGUCGUGGCC-CaCCU----------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 130812 0.69 0.743887
Target:  5'- -cGCGGCGuCCGGGUcccgcucGAGGCGCGg -3'
miRNA:   3'- cuUGUCGU-GGCCCAccuu---CUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 67860 0.69 0.738022
Target:  5'- cGAGcCGGCGCCGaGGUGGcGcgcgcgccagcccgcGGGGCACa -3'
miRNA:   3'- -CUU-GUCGUGGC-CCACCuU---------------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 80027 0.69 0.734094
Target:  5'- --uCGGCgAUCGGGgacGGggGAGGCGgGa -3'
miRNA:   3'- cuuGUCG-UGGCCCa--CCuuCUCCGUgC- -5'
29382 5' -56.5 NC_006151.1 + 27568 0.69 0.734094
Target:  5'- gGGACgGGgGCCGGGUGGGugggcGAGGCucccCGa -3'
miRNA:   3'- -CUUG-UCgUGGCCCACCUu----CUCCGu---GC- -5'
29382 5' -56.5 NC_006151.1 + 27497 0.69 0.734094
Target:  5'- uGGugGGaACgGGGUgGGAGGGGGUGCGa -3'
miRNA:   3'- -CUugUCgUGgCCCA-CCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 31641 0.69 0.733109
Target:  5'- cGAGCgcacgcgGGCGCgCGGGgagGGAGGAGG-GCGg -3'
miRNA:   3'- -CUUG-------UCGUG-GCCCa--CCUUCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 72173 0.69 0.724211
Target:  5'- cGAGCAGCGgCGGGac---GAGGCACa -3'
miRNA:   3'- -CUUGUCGUgGCCCaccuuCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 90742 0.69 0.724211
Target:  5'- cGGCGGCGCCcucGGG-GGcGGcGGGCACGg -3'
miRNA:   3'- cUUGUCGUGG---CCCaCCuUC-UCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.