miRNA display CGI


Results 41 - 60 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 133420 0.67 0.419334
Target:  5'- uGgCCGCGGaCGCGGGgGUcuuGgCGGCCGa -3'
miRNA:   3'- -CgGGCGCUcGCGCCCgCG---CgGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 133309 0.72 0.180484
Target:  5'- cCCCGgGGGCGgcccguguCGaGGCGCGCCGGgCGg -3'
miRNA:   3'- cGGGCgCUCGC--------GC-CCGCGCGGCUgGC- -5'
29383 3' -66.6 NC_006151.1 + 133156 0.69 0.289573
Target:  5'- cGgCgGCG-GCGCGGGCGUGggccUCGGCCa -3'
miRNA:   3'- -CgGgCGCuCGCGCCCGCGC----GGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 132833 0.77 0.094283
Target:  5'- cGCCCGCGGGaCGgccaccaCGGGCG-GCCGGCCc -3'
miRNA:   3'- -CGGGCGCUC-GC-------GCCCGCgCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 132513 0.67 0.411251
Target:  5'- cGCCCGC-AGCGUGGacacgaagaaGCGCuccaCGGCCGc -3'
miRNA:   3'- -CGGGCGcUCGCGCC----------CGCGcg--GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 132038 0.69 0.322189
Target:  5'- aGCCgGCGGcGCGCGGcaGCGCGgCGGagaaCGg -3'
miRNA:   3'- -CGGgCGCU-CGCGCC--CGCGCgGCUg---GC- -5'
29383 3' -66.6 NC_006151.1 + 131949 0.66 0.478472
Target:  5'- gGCCacggGCGAGgGCGGGCG-GCaguaCGugUGg -3'
miRNA:   3'- -CGGg---CGCUCgCGCCCGCgCG----GCugGC- -5'
29383 3' -66.6 NC_006151.1 + 131868 0.68 0.357472
Target:  5'- cGCCgGCG-GCGuCGGGuCGCagggcaGCaCGGCCGa -3'
miRNA:   3'- -CGGgCGCuCGC-GCCC-GCG------CG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 131776 0.72 0.180484
Target:  5'- -aCCGCGGcCGCGGGCGCcGCCG-UCGu -3'
miRNA:   3'- cgGGCGCUcGCGCCCGCG-CGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 131542 0.68 0.329033
Target:  5'- uCuuGCGAGCGCcucGGGCGCcGCacgGGCCc -3'
miRNA:   3'- cGggCGCUCGCG---CCCGCG-CGg--CUGGc -5'
29383 3' -66.6 NC_006151.1 + 131438 0.68 0.34304
Target:  5'- cCUCGuCGGGCgGCGGGCggaaguccggGCGCCGcACCu -3'
miRNA:   3'- cGGGC-GCUCG-CGCCCG----------CGCGGC-UGGc -5'
29383 3' -66.6 NC_006151.1 + 131117 0.73 0.176326
Target:  5'- cGgCCGCG-GCGCGGGaggccgcgGCGCCGcgGCCGu -3'
miRNA:   3'- -CgGGCGCuCGCGCCCg-------CGCGGC--UGGC- -5'
29383 3' -66.6 NC_006151.1 + 130987 0.66 0.461141
Target:  5'- cGCCCGgGcugaaacuGGCgGCGGuagaGCGUGCCGGCg- -3'
miRNA:   3'- -CGGGCgC--------UCG-CGCC----CGCGCGGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 130929 0.77 0.087588
Target:  5'- gGCCCGCGGGgGCGGGggcggcgggggguCGCGCgGGCgCGg -3'
miRNA:   3'- -CGGGCGCUCgCGCCC-------------GCGCGgCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 130856 0.66 0.444148
Target:  5'- cGUCgGCG-GCGCGGGCGgGaCCGcAgUGg -3'
miRNA:   3'- -CGGgCGCuCGCGCCCGCgC-GGC-UgGC- -5'
29383 3' -66.6 NC_006151.1 + 130727 0.72 0.207301
Target:  5'- gGCCCGCGcGGcCGCGGcGCaGCGCC-ACCc -3'
miRNA:   3'- -CGGGCGC-UC-GCGCC-CG-CGCGGcUGGc -5'
29383 3' -66.6 NC_006151.1 + 130675 0.7 0.2695
Target:  5'- uGCCCGCgGGGCGCggcgcaggauguccGGGgGC-CCGACgGg -3'
miRNA:   3'- -CGGGCG-CUCGCG--------------CCCgCGcGGCUGgC- -5'
29383 3' -66.6 NC_006151.1 + 130542 0.73 0.164357
Target:  5'- cGCCCccgcGCGAGgGCGGcGCGCuGCCGcCCc -3'
miRNA:   3'- -CGGG----CGCUCgCGCC-CGCG-CGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 130509 0.66 0.469766
Target:  5'- cGCCgCGCGucucgGGCGCGGGCGuCGCguACa- -3'
miRNA:   3'- -CGG-GCGC-----UCGCGCCCGC-GCGgcUGgc -5'
29383 3' -66.6 NC_006151.1 + 130410 1.09 0.00039
Target:  5'- cGCCCGCGAGCGCGGGCGCGCCGACCGu -3'
miRNA:   3'- -CGGGCGCUCGCGCCCGCGCGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.