Results 61 - 80 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 3' | -53.5 | NC_006151.1 | + | 71759 | 0.71 | 0.809481 |
Target: 5'- ---cGCCGcGCGUgGuCCuGCGGCAGCg -3' miRNA: 3'- cgaaCGGCuUGCAgCuGG-UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 18795 | 0.71 | 0.809481 |
Target: 5'- aGCUccuugaUGaCCGuGACGuacUCGGCCGCGGUGGCg -3' miRNA: 3'- -CGA------AC-GGC-UUGC---AGCUGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 31562 | 0.71 | 0.809481 |
Target: 5'- cGCggUGCgCGAACGU-GAUCACgggggGGCGGCg -3' miRNA: 3'- -CGa-ACG-GCUUGCAgCUGGUG-----UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 82981 | 0.7 | 0.818328 |
Target: 5'- --aUGCCGcGCGUCugcgccGCCACGGCcGCg -3' miRNA: 3'- cgaACGGCuUGCAGc-----UGGUGUCGuCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 113876 | 0.7 | 0.818328 |
Target: 5'- gGCUccUGCgGcgcaaguCGUCGGCCGC-GCGGCg -3' miRNA: 3'- -CGA--ACGgCuu-----GCAGCUGGUGuCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 102902 | 0.7 | 0.818328 |
Target: 5'- ---cGCCGccuCGUCGACuCGCuGGCGGCc -3' miRNA: 3'- cgaaCGGCuu-GCAGCUG-GUG-UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 22909 | 0.7 | 0.818328 |
Target: 5'- gGCgaGaCGAAgGUCGGCUcCGGCGGCa -3' miRNA: 3'- -CGaaCgGCUUgCAGCUGGuGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 72266 | 0.7 | 0.818328 |
Target: 5'- ---cGCCGAGCGgcgUGGCCAgCAuGCGGUg -3' miRNA: 3'- cgaaCGGCUUGCa--GCUGGU-GU-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 75218 | 0.7 | 0.818328 |
Target: 5'- ---cGUCGGggcgcGCGUCGGCCACGuaGGCg -3' miRNA: 3'- cgaaCGGCU-----UGCAGCUGGUGUcgUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 81190 | 0.7 | 0.818328 |
Target: 5'- ---cGCCGAGCGUguacgccgGGCCGCAGUccgGGCg -3' miRNA: 3'- cgaaCGGCUUGCAg-------CUGGUGUCG---UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 36619 | 0.7 | 0.818328 |
Target: 5'- cGCcggGCCGGucucgGCGccCGGCgGCGGCGGCg -3' miRNA: 3'- -CGaa-CGGCU-----UGCa-GCUGgUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 114839 | 0.7 | 0.818328 |
Target: 5'- gGCacGCCGuGCG-CGACCACGuaGGCg -3' miRNA: 3'- -CGaaCGGCuUGCaGCUGGUGUcgUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 135363 | 0.7 | 0.827 |
Target: 5'- ---cGCCGcGCGUUGGCCGCGuGCGccGCg -3' miRNA: 3'- cgaaCGGCuUGCAGCUGGUGU-CGU--CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 132826 | 0.7 | 0.827 |
Target: 5'- gGCUgGCCGcccGCGggaCGGCCACcacgGGCGGCc -3' miRNA: 3'- -CGAaCGGCu--UGCa--GCUGGUG----UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 72336 | 0.7 | 0.827 |
Target: 5'- aGCcaugGCCGcgagcACGUCGccGCCGCagGGCAGCg -3' miRNA: 3'- -CGaa--CGGCu----UGCAGC--UGGUG--UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 136394 | 0.7 | 0.827 |
Target: 5'- cGCUucugcUGCCuGAGCGgcuacgcgCGGggccCCGCGGCGGCg -3' miRNA: 3'- -CGA-----ACGG-CUUGCa-------GCU----GGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 91111 | 0.7 | 0.827 |
Target: 5'- ---gGCCGcGGCGcccuUCG-CCACGGCGGCg -3' miRNA: 3'- cgaaCGGC-UUGC----AGCuGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 117322 | 0.7 | 0.827 |
Target: 5'- ---cGCCGAgggcgGCGUCGGCCuCGGCcuuGCc -3' miRNA: 3'- cgaaCGGCU-----UGCAGCUGGuGUCGu--CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 112039 | 0.7 | 0.83549 |
Target: 5'- aGCUgggGCCGGcggGCGggCGGCgGCGGUGGUg -3' miRNA: 3'- -CGAa--CGGCU---UGCa-GCUGgUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 88910 | 0.7 | 0.83549 |
Target: 5'- gGCgucgGgCGAGCGgaagCGcCCGCGGCGGUa -3' miRNA: 3'- -CGaa--CgGCUUGCa---GCuGGUGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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