miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 142984 0.69 0.859782
Target:  5'- --cUGCCGcggGugGgccCGACCGCAGCAucGCg -3'
miRNA:   3'- cgaACGGC---UugCa--GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 142234 0.66 0.961924
Target:  5'- ---cGCCGGgucgcgacgagGCGUCGGUCAUcGCGGCg -3'
miRNA:   3'- cgaaCGGCU-----------UGCAGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 141616 0.74 0.599724
Target:  5'- gGC-UGCCGGgaucgggcGgGUCGcuGCCGCGGCGGCg -3'
miRNA:   3'- -CGaACGGCU--------UgCAGC--UGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 139681 0.69 0.882166
Target:  5'- ---gGCCcuGCGgcagCGGCgGCGGCAGCa -3'
miRNA:   3'- cgaaCGGcuUGCa---GCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 138234 0.69 0.889175
Target:  5'- cGCgcGCaCGAguacGCGggcgCGACCGC-GCAGCg -3'
miRNA:   3'- -CGaaCG-GCU----UGCa---GCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 137903 0.72 0.713392
Target:  5'- ---cGCC-AAgGUCGACgGCGGCGGCu -3'
miRNA:   3'- cgaaCGGcUUgCAGCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 137105 0.65 0.97062
Target:  5'- uGCUgGCCGGggacgccugggggcGCG-CGACgGC-GCGGCg -3'
miRNA:   3'- -CGAaCGGCU--------------UGCaGCUGgUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 136745 0.69 0.874927
Target:  5'- ---cGCCGAGCGUCGcgcgccucGCCcCGGCcaugGGCg -3'
miRNA:   3'- cgaaCGGCUUGCAGC--------UGGuGUCG----UCG- -5'
29384 3' -53.5 NC_006151.1 + 136394 0.7 0.827
Target:  5'- cGCUucugcUGCCuGAGCGgcuacgcgCGGggccCCGCGGCGGCg -3'
miRNA:   3'- -CGA-----ACGG-CUUGCa-------GCU----GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 135955 0.66 0.968517
Target:  5'- cGCggcGCgGGACGUCcucgaGGCCAUggacgaGGCGGCc -3'
miRNA:   3'- -CGaa-CGgCUUGCAG-----CUGGUG------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 135363 0.7 0.827
Target:  5'- ---cGCCGcGCGUUGGCCGCGuGCGccGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCUGGUGU-CGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 135096 0.71 0.77252
Target:  5'- gGCgggGCCGGGCG--GGCgGCGGUAGCg -3'
miRNA:   3'- -CGaa-CGGCUUGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133606 0.68 0.902489
Target:  5'- cGUagGCCGAgggGCGUCuGGgggUCGCGGCGGCc -3'
miRNA:   3'- -CGaaCGGCU---UGCAG-CU---GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133476 0.68 0.91484
Target:  5'- cGCgaggcgGCCGcgGGCGUC-ACCuuGGCGGCg -3'
miRNA:   3'- -CGaa----CGGC--UUGCAGcUGGugUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133397 0.67 0.942815
Target:  5'- gGCcgggGCCGAGCGggcggucUUGGCCGCggacgcgggggucuuGGCGGCc -3'
miRNA:   3'- -CGaa--CGGCUUGC-------AGCUGGUG---------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133331 0.76 0.518207
Target:  5'- gGCgcGCCGGGCGgcCGGuuCCGCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUUGCa-GCU--GGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133212 0.68 0.91484
Target:  5'- cGCUUGuuGAaggcguGCGUCGcGCCGCGcCAGg -3'
miRNA:   3'- -CGAACggCU------UGCAGC-UGGUGUcGUCg -5'
29384 3' -53.5 NC_006151.1 + 132826 0.7 0.827
Target:  5'- gGCUgGCCGcccGCGggaCGGCCACcacgGGCGGCc -3'
miRNA:   3'- -CGAaCGGCu--UGCa--GCUGGUG----UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 132166 0.71 0.791297
Target:  5'- aGCUgcgcgGCCGGcaccgGCG-CGcCCgACAGCAGCa -3'
miRNA:   3'- -CGAa----CGGCU-----UGCaGCuGG-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 131898 0.68 0.895951
Target:  5'- ---gGCCGAGgG-CGACgGgGGCGGCa -3'
miRNA:   3'- cgaaCGGCUUgCaGCUGgUgUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.