Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 3' | -53.5 | NC_006151.1 | + | 84344 | 0.74 | 0.620489 |
Target: 5'- ---cGCCGAguACGUCGccggcCCGCGGCGGUg -3' miRNA: 3'- cgaaCGGCU--UGCAGCu----GGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 22314 | 0.74 | 0.605946 |
Target: 5'- ---cGCCGAGCGUCGuccgggcgaccagcGCCGCcaauagcgcugcgAGCAGCa -3' miRNA: 3'- cgaaCGGCUUGCAGC--------------UGGUG-------------UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 6392 | 0.73 | 0.693008 |
Target: 5'- aGCgagGCCGGGCGcCGAgCGCggagagcgGGCGGCg -3' miRNA: 3'- -CGaa-CGGCUUGCaGCUgGUG--------UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 103799 | 0.73 | 0.703231 |
Target: 5'- cGCUgcagGCCGcGCuGUCGGCgGCcguGGCGGCg -3' miRNA: 3'- -CGAa---CGGCuUG-CAGCUGgUG---UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 2276 | 0.73 | 0.682732 |
Target: 5'- aGCacgGCCG-GCGgggCGcCCGCGGCGGCg -3' miRNA: 3'- -CGaa-CGGCuUGCa--GCuGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 96211 | 0.73 | 0.672414 |
Target: 5'- cGCgucGCCGuGGCGgCGGCCGCGGCgaGGCg -3' miRNA: 3'- -CGaa-CGGC-UUGCaGCUGGUGUCG--UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 81513 | 0.73 | 0.662061 |
Target: 5'- aGCgcgGCCcgcguGAGCucggCGGCCGCGGCGGCg -3' miRNA: 3'- -CGaa-CGG-----CUUGca--GCUGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 73272 | 0.73 | 0.672414 |
Target: 5'- cGgUUGCCG-GCGUUGACCgu-GCGGCg -3' miRNA: 3'- -CgAACGGCuUGCAGCUGGuguCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 111990 | 0.73 | 0.703231 |
Target: 5'- aGCggUGCgGcuacGACGUCGA-CGCGGCGGCg -3' miRNA: 3'- -CGa-ACGgC----UUGCAGCUgGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 72753 | 0.73 | 0.662061 |
Target: 5'- ---cGCCGAGuCGcUGGCgCACAGCGGCg -3' miRNA: 3'- cgaaCGGCUU-GCaGCUG-GUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 84613 | 0.72 | 0.743409 |
Target: 5'- cGCgcGCCGccGCG-CGGCCGCcGCGGCg -3' miRNA: 3'- -CGaaCGGCu-UGCaGCUGGUGuCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 66768 | 0.72 | 0.742421 |
Target: 5'- cGCgacgGCCGcccucggGACGgCGGCgGCGGCGGCg -3' miRNA: 3'- -CGaa--CGGC-------UUGCaGCUGgUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 75640 | 0.72 | 0.723482 |
Target: 5'- gGCUUGCCGu-CGUCGggggccggcucGCCGCcgAGCAGg -3' miRNA: 3'- -CGAACGGCuuGCAGC-----------UGGUG--UCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 54738 | 0.72 | 0.717437 |
Target: 5'- aGCUcGCCGAggccaugcgcgGCGUcaccaucauggacuaCGACCGCGuGCAGCu -3' miRNA: 3'- -CGAaCGGCU-----------UGCA---------------GCUGGUGU-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 5637 | 0.72 | 0.753226 |
Target: 5'- ---cGCCGGGCGccgagacCGGCC-CGGCGGCg -3' miRNA: 3'- cgaaCGGCUUGCa------GCUGGuGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 64295 | 0.72 | 0.723482 |
Target: 5'- cGCgUUGUCGGGCGU--GCCGCAGCGcGCc -3' miRNA: 3'- -CG-AACGGCUUGCAgcUGGUGUCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 52820 | 0.72 | 0.733491 |
Target: 5'- ---gGCCG-GCGUUGGCCGCgAGcCAGCg -3' miRNA: 3'- cgaaCGGCuUGCAGCUGGUG-UC-GUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 137903 | 0.72 | 0.713392 |
Target: 5'- ---cGCC-AAgGUCGACgGCGGCGGCu -3' miRNA: 3'- cgaaCGGcUUgCAGCUGgUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 18130 | 0.72 | 0.723482 |
Target: 5'- cGCUgggGUCGAACGuguccaugUCGGCgGgGGCGGCg -3' miRNA: 3'- -CGAa--CGGCUUGC--------AGCUGgUgUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 40519 | 0.72 | 0.723482 |
Target: 5'- ---gGCCGGAgGU-GGCUGCGGCGGCg -3' miRNA: 3'- cgaaCGGCUUgCAgCUGGUGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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