Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29385 | 3' | -58.9 | NC_006151.1 | + | 103914 | 0.72 | 0.434594 |
Target: 5'- gGCGCgCGCGGCCgCCGUGGAGGagCCg-- -3' miRNA: 3'- -CGCG-GCGUUGG-GGUACUUCCg-GGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 15228 | 0.72 | 0.399916 |
Target: 5'- aGCGCCccuCGGCCCCcugcUGGcAGGCCCUGc -3' miRNA: 3'- -CGCGGc--GUUGGGGu---ACU-UCCGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 39867 | 0.71 | 0.480282 |
Target: 5'- aGCuCCGCGGCCCC--GAGGGCCUg-- -3' miRNA: 3'- -CGcGGCGUUGGGGuaCUUCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 55900 | 0.71 | 0.461715 |
Target: 5'- uGCGCCgggcgaccgaGCGGCUCCGcgaUGGAGGCCgUGa -3' miRNA: 3'- -CGCGG----------CGUUGGGGU---ACUUCCGGgACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 99124 | 0.71 | 0.480282 |
Target: 5'- gGCGCUGCugGACCCCggGGcgcAGGCCgUGc -3' miRNA: 3'- -CGCGGCG--UUGGGGuaCU---UCCGGgACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 37335 | 0.71 | 0.461715 |
Target: 5'- cGgGCCGCugcucACCCCGcucGggGaGCCCUGg -3' miRNA: 3'- -CgCGGCGu----UGGGGUa--CuuC-CGGGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 82678 | 0.71 | 0.458962 |
Target: 5'- cGCGCCGCGGgcgagggcggcggcCCCCGcGAGGGCCa--- -3' miRNA: 3'- -CGCGGCGUU--------------GGGGUaCUUCCGGgaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 29070 | 0.71 | 0.470952 |
Target: 5'- gGCGCCGCgGGCCCCGaGAcGGCCg--- -3' miRNA: 3'- -CGCGGCG-UUGGGGUaCUuCCGGgaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 73612 | 0.71 | 0.489701 |
Target: 5'- gGCGCCGCAGCUgguggGUGAAGGCCacgGg -3' miRNA: 3'- -CGCGGCGUUGGgg---UACUUCCGGga-Ca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 123315 | 0.71 | 0.489701 |
Target: 5'- cGCGCa-CAGCUUCAUGAAGGCCacgGUg -3' miRNA: 3'- -CGCGgcGUUGGGGUACUUCCGGga-CA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 128813 | 0.71 | 0.452574 |
Target: 5'- gGCGCgCGUGGCCCCGUacgcGGcgcucuGGGCCUUGUg -3' miRNA: 3'- -CGCG-GCGUUGGGGUA----CU------UCCGGGACA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 57749 | 0.71 | 0.443533 |
Target: 5'- cGCGCCGCAGCCgCucgu-GGCCCgGg -3' miRNA: 3'- -CGCGGCGUUGGgGuacuuCCGGGaCa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 36571 | 0.7 | 0.528189 |
Target: 5'- -gGCCGCAGCgCCGgcacggcGggGGCCCg-- -3' miRNA: 3'- cgCGGCGUUGgGGUa------CuuCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 37867 | 0.7 | 0.547853 |
Target: 5'- cGCGCCGCgGACCCCcgcgccgggGAggcgaccgucgAGGCCCUc- -3' miRNA: 3'- -CGCGGCG-UUGGGGua-------CU-----------UCCGGGAca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 54398 | 0.7 | 0.518454 |
Target: 5'- cGCGCgCGCGGCCUCGgcgccGAGGCgCUGg -3' miRNA: 3'- -CGCG-GCGUUGGGGUac---UUCCGgGACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 71338 | 0.7 | 0.53799 |
Target: 5'- uGCGCCGaCGACCUCGccguGGCCCUcGUc -3' miRNA: 3'- -CGCGGC-GUUGGGGUacuuCCGGGA-CA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 64307 | 0.7 | 0.547853 |
Target: 5'- cGUGCCGCAGCgCgCCGUGcuGGCCUc-- -3' miRNA: 3'- -CGCGGCGUUG-G-GGUACuuCCGGGaca -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 109520 | 0.7 | 0.535043 |
Target: 5'- cCGCCGCAgccgucucagcagcGCCCCccGGAGGCgCCgUGg -3' miRNA: 3'- cGCGGCGU--------------UGGGGuaCUUCCG-GG-ACa -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 135381 | 0.7 | 0.50783 |
Target: 5'- uGCGCCGCGACCacggcguccaggCCGUcgucgccGGAGGCCUcGUg -3' miRNA: 3'- -CGCGGCGUUGG------------GGUA-------CUUCCGGGaCA- -5' |
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29385 | 3' | -58.9 | NC_006151.1 | + | 71232 | 0.7 | 0.547853 |
Target: 5'- cGCGCgCGcCGACCCCGUcGAGuaCCUGa -3' miRNA: 3'- -CGCG-GC-GUUGGGGUAcUUCcgGGACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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