Results 1 - 20 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29386 | 5' | -63.8 | NC_006151.1 | + | 125456 | 1.07 | 0.000804 |
Target: 5'- uGAACCCCAGCGCCGUGGCCACGGCCGc -3' miRNA: 3'- -CUUGGGGUCGCGGCACCGGUGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 37750 | 0.83 | 0.043307 |
Target: 5'- uGGGCCCUgccgcacgcggugAGCGCCGUGGCCAUGaGCCGc -3' miRNA: 3'- -CUUGGGG-------------UCGCGGCACCGGUGC-CGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 38264 | 0.82 | 0.048168 |
Target: 5'- -cGCCCCGGCcaaCGUGGCCGCGGCCc -3' miRNA: 3'- cuUGGGGUCGcg-GCACCGGUGCCGGc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 50337 | 0.81 | 0.054817 |
Target: 5'- ---gCCCGGCGCC-UGGCCGCGGCCu -3' miRNA: 3'- cuugGGGUCGCGGcACCGGUGCCGGc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 89712 | 0.8 | 0.065643 |
Target: 5'- gGAACCCggCGGCGCC--GGCCGCGGCCGc -3' miRNA: 3'- -CUUGGG--GUCGCGGcaCCGGUGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 4856 | 0.78 | 0.09052 |
Target: 5'- gGAGuCCCCGGCGCCGccguagcggacgcGGCCGuCGGCCGg -3' miRNA: 3'- -CUU-GGGGUCGCGGCa------------CCGGU-GCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 78158 | 0.77 | 0.117563 |
Target: 5'- -cGCCUCGGcCGCCGUGGUCGaGGCCGu -3' miRNA: 3'- cuUGGGGUC-GCGGCACCGGUgCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 113592 | 0.77 | 0.111835 |
Target: 5'- cGACCCCcuguGCGCCGUGGCCGaGcGCCa -3' miRNA: 3'- cUUGGGGu---CGCGGCACCGGUgC-CGGc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 96204 | 0.77 | 0.106369 |
Target: 5'- gGGGCgCCGcGuCGCCGUGGCgGCGGCCGc -3' miRNA: 3'- -CUUGgGGU-C-GCGGCACCGgUGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 90088 | 0.77 | 0.117563 |
Target: 5'- aGGGCCCCcgccGCGCCGcaGGCCGCGGCg- -3' miRNA: 3'- -CUUGGGGu---CGCGGCa-CCGGUGCCGgc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 78414 | 0.76 | 0.136424 |
Target: 5'- cGGGCCgCgAGCGCCGUGGCCcAC-GCCGu -3' miRNA: 3'- -CUUGG-GgUCGCGGCACCGG-UGcCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 70626 | 0.76 | 0.139827 |
Target: 5'- aGAUCCUcggcGGCGCCGUGGCCGCGcGCg- -3' miRNA: 3'- cUUGGGG----UCGCGGCACCGGUGC-CGgc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 130348 | 0.76 | 0.143307 |
Target: 5'- -cGCCgCGGCGUCGUGGUUgACGGCCGc -3' miRNA: 3'- cuUGGgGUCGCGGCACCGG-UGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 4792 | 0.76 | 0.129847 |
Target: 5'- cGGCCgCGGCGCgGUagcgGGCCGCGGCCu -3' miRNA: 3'- cUUGGgGUCGCGgCA----CCGGUGCCGGc -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 112725 | 0.76 | 0.123563 |
Target: 5'- aGGCCCUGGCcugccccCCGUGcGCCACGGCCGu -3' miRNA: 3'- cUUGGGGUCGc------GGCAC-CGGUGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 50263 | 0.76 | 0.133098 |
Target: 5'- uGAGCaCCUucggacgcGCGuCCGUGGCCACGGUCGa -3' miRNA: 3'- -CUUG-GGGu-------CGC-GGCACCGGUGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 2181 | 0.76 | 0.133098 |
Target: 5'- cGGCCCCGGCGCCcgaGGCCcccGCGGgCCGg -3' miRNA: 3'- cUUGGGGUCGCGGca-CCGG---UGCC-GGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 36319 | 0.76 | 0.123563 |
Target: 5'- cGGGCCCCGGUcccggGCCGgcuccgGGCCcCGGCCGc -3' miRNA: 3'- -CUUGGGGUCG-----CGGCa-----CCGGuGCCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 76883 | 0.76 | 0.123563 |
Target: 5'- gGAGCCCCAGCGCCGccuGCUGC-GCCGg -3' miRNA: 3'- -CUUGGGGUCGCGGCac-CGGUGcCGGC- -5' |
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29386 | 5' | -63.8 | NC_006151.1 | + | 67990 | 0.75 | 0.146866 |
Target: 5'- cGGCCcgCCGGCGCCGcGGCCACGGgCu -3' miRNA: 3'- cUUGG--GGUCGCGGCaCCGGUGCCgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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