Results 21 - 40 of 273 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 99102 | 0.76 | 0.429067 |
Target: 5'- uGCGCACG-GAccAgGGCGUGCUGGcGCUg -3' miRNA: 3'- cCGCGUGCaCU--UgCUGUACGACC-CGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 54683 | 0.76 | 0.385968 |
Target: 5'- gGGCaccuGCGCGUcgccGGCaGCGUGCUGGGCCa -3' miRNA: 3'- -CCG----CGUGCAc---UUGcUGUACGACCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 98952 | 0.76 | 0.42022 |
Target: 5'- cGGCGCGggcCGUGGACGAgGcggcGCUGGuGCCc -3' miRNA: 3'- -CCGCGU---GCACUUGCUgUa---CGACC-CGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 114416 | 0.76 | 0.402864 |
Target: 5'- cGGUGCACGUGcaccACcGCGUGCUGGaCCg -3' miRNA: 3'- -CCGCGUGCACu---UGcUGUACGACCcGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 136999 | 0.76 | 0.42022 |
Target: 5'- gGGCGCGCGcGcACGGC--GCUGGGCg -3' miRNA: 3'- -CCGCGUGCaCuUGCUGuaCGACCCGg -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 28659 | 0.75 | 0.456248 |
Target: 5'- aGGgGCACGUGGggcaaACGGCGggaucUGaUUGGGCCa -3' miRNA: 3'- -CCgCGUGCACU-----UGCUGU-----AC-GACCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 140069 | 0.75 | 0.465512 |
Target: 5'- cGGCGCGCGUGcuccGCGAgaugGUGCUccugaacgaGGGCCu -3' miRNA: 3'- -CCGCGUGCACu---UGCUg---UACGA---------CCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 78051 | 0.75 | 0.447083 |
Target: 5'- cGGCGCAUcUGGGCGACGcGCggcgGGaGCCu -3' miRNA: 3'- -CCGCGUGcACUUGCUGUaCGa---CC-CGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 103230 | 0.75 | 0.484329 |
Target: 5'- uGCGCGCGaUGGAgGACcUGCUGcGGCa -3' miRNA: 3'- cCGCGUGC-ACUUgCUGuACGAC-CCGg -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 119458 | 0.75 | 0.484329 |
Target: 5'- cGGCG-ACGUGGACGcCGUGCgcuacGuGGCCg -3' miRNA: 3'- -CCGCgUGCACUUGCuGUACGa----C-CCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 22083 | 0.74 | 0.503501 |
Target: 5'- gGGCGCgguACGUGGGCcGCcgG-UGGGCCa -3' miRNA: 3'- -CCGCG---UGCACUUGcUGuaCgACCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 102406 | 0.74 | 0.513211 |
Target: 5'- cGGCGCGCGUcgcgcggcccgcGAACGAggcCAUGCaccGGGCg -3' miRNA: 3'- -CCGCGUGCA------------CUUGCU---GUACGa--CCCGg -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 75157 | 0.74 | 0.532853 |
Target: 5'- gGGCGCACGg--GCauCAUGCcGGGCCa -3' miRNA: 3'- -CCGCGUGCacuUGcuGUACGaCCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 3271 | 0.74 | 0.522996 |
Target: 5'- cGGCGCGCG---GCGAUGUGCgccaGGGCg -3' miRNA: 3'- -CCGCGUGCacuUGCUGUACGa---CCCGg -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 102100 | 0.74 | 0.493873 |
Target: 5'- aGGaGCACGUGGuCG-CGUGCgcGGGCCg -3' miRNA: 3'- -CCgCGUGCACUuGCuGUACGa-CCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 96878 | 0.73 | 0.542775 |
Target: 5'- cGGCGCGCGcgggggcaUGAugGgAUGUGuCUGGGCg -3' miRNA: 3'- -CCGCGUGC--------ACUugC-UGUAC-GACCCGg -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 113308 | 0.73 | 0.593168 |
Target: 5'- cGCGCG-GUGGACGcCAcGCUgGGGCCc -3' miRNA: 3'- cCGCGUgCACUUGCuGUaCGA-CCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 19072 | 0.73 | 0.593168 |
Target: 5'- gGGCGCGCGcgGGugGuAgAUGCaGGGCUc -3' miRNA: 3'- -CCGCGUGCa-CUugC-UgUACGaCCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 131904 | 0.73 | 0.583005 |
Target: 5'- gGGCG-ACGgGGGCGGCA-GCaGGGCCu -3' miRNA: 3'- -CCGCgUGCaCUUGCUGUaCGaCCCGG- -5' |
|||||||
29387 | 5' | -55.6 | NC_006151.1 | + | 81219 | 0.73 | 0.583005 |
Target: 5'- gGGCGCcggcGCGUGAacACGAa--GCUGGcGCCc -3' miRNA: 3'- -CCGCG----UGCACU--UGCUguaCGACC-CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home