miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 123853 0.72 0.609139
Target:  5'- -gCGGGGcGCCGUCG-CGCUAgcgCUGCUg -3'
miRNA:   3'- gaGCCUC-CGGUAGCuGCGGUa--GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 98273 0.72 0.609139
Target:  5'- gCUCgaGGAGGCCGaCcACGCCGUC-GCCa -3'
miRNA:   3'- -GAG--CCUCCGGUaGcUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 120584 0.72 0.619338
Target:  5'- uCUCGGuGGaCUA-CGGCGCCAUCaACUa -3'
miRNA:   3'- -GAGCCuCC-GGUaGCUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 138648 0.72 0.629547
Target:  5'- aCUgGGAGGCCuUCaACGCCAcggccaUCUACg -3'
miRNA:   3'- -GAgCCUCCGGuAGcUGCGGU------AGAUGg -5'
29388 3' -55.6 NC_006151.1 + 96751 0.72 0.629547
Target:  5'- -aCGGAGGCCAU-GGCGgCGUgUGCUc -3'
miRNA:   3'- gaGCCUCCGGUAgCUGCgGUAgAUGG- -5'
29388 3' -55.6 NC_006151.1 + 71648 0.72 0.638737
Target:  5'- gUCgGGGGGCCGUCGaagaugcacacgcGCGCCAcggGCCg -3'
miRNA:   3'- gAG-CCUCCGGUAGC-------------UGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 92316 0.72 0.639758
Target:  5'- -aUGGAGGCggacgaCGUCuGCGCCAaccUCUACCa -3'
miRNA:   3'- gaGCCUCCG------GUAGcUGCGGU---AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 100972 0.72 0.639758
Target:  5'- aUCGGcuccuGGCCgagGUCGACGCCGUgU-CCa -3'
miRNA:   3'- gAGCCu----CCGG---UAGCUGCGGUAgAuGG- -5'
29388 3' -55.6 NC_006151.1 + 22552 0.72 0.649963
Target:  5'- -gCGGAGGCCA-CGugGCgGUa-GCCg -3'
miRNA:   3'- gaGCCUCCGGUaGCugCGgUAgaUGG- -5'
29388 3' -55.6 NC_006151.1 + 99359 0.71 0.660154
Target:  5'- -aCGGcGGUCGUCGGCGgCGUCgugcACCg -3'
miRNA:   3'- gaGCCuCCGGUAGCUGCgGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 113555 0.71 0.670322
Target:  5'- -cCGcGGGCCcgCG-CGCCGUCUACa -3'
miRNA:   3'- gaGCcUCCGGuaGCuGCGGUAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 6261 0.71 0.670322
Target:  5'- gUCGG-GGCCGgacgCGAUGCCcUCUuCCu -3'
miRNA:   3'- gAGCCuCCGGUa---GCUGCGGuAGAuGG- -5'
29388 3' -55.6 NC_006151.1 + 136761 0.71 0.680459
Target:  5'- cCUCGccccGGCCAUgGGCGCCggCUACg -3'
miRNA:   3'- -GAGCcu--CCGGUAgCUGCGGuaGAUGg -5'
29388 3' -55.6 NC_006151.1 + 35313 0.71 0.680459
Target:  5'- gUCGaGGGGCCAagaUGGCGCCcUCgggGCCg -3'
miRNA:   3'- gAGC-CUCCGGUa--GCUGCGGuAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 139628 0.71 0.690557
Target:  5'- -cUGGGGGCCAUcCGGCGCCGgc-GCg -3'
miRNA:   3'- gaGCCUCCGGUA-GCUGCGGUagaUGg -5'
29388 3' -55.6 NC_006151.1 + 20489 0.71 0.700607
Target:  5'- -gCGGGGGUCGUCGGCGgC-UCUGgCu -3'
miRNA:   3'- gaGCCUCCGGUAGCUGCgGuAGAUgG- -5'
29388 3' -55.6 NC_006151.1 + 71291 0.71 0.700607
Target:  5'- cCUCGGGGGCCggCGAgcacCG-CGUCUucACCg -3'
miRNA:   3'- -GAGCCUCCGGuaGCU----GCgGUAGA--UGG- -5'
29388 3' -55.6 NC_006151.1 + 135393 0.71 0.700607
Target:  5'- -aCGGcguccAGGCCGUCGuCGCCGgagGCCu -3'
miRNA:   3'- gaGCC-----UCCGGUAGCuGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 52331 0.7 0.717555
Target:  5'- uCUCGcugagcgccgcaaaGAGGUCGUCGuCGUCGUCcGCCg -3'
miRNA:   3'- -GAGC--------------CUCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 99832 0.7 0.720525
Target:  5'- gUCGuGAcGGCCGUggcCGACGCCuacaaCUGCCu -3'
miRNA:   3'- gAGC-CU-CCGGUA---GCUGCGGua---GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.