miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 3' -59.5 NC_001493.1 + 63895 1.12 0.000867
Target:  5'- cGCGGUGACCACCACACCGGCGACGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63781 1.09 0.001408
Target:  5'- cGCGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63230 1.08 0.001611
Target:  5'- cGUGGUGACCACCGCACCGGCGACGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63940 1.08 0.001747
Target:  5'- cGCGGUGACCACCACAUCGGCGACGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63409 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63454 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63535 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63658 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63838 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63365 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63275 1.06 0.00235
Target:  5'- cGUGGUGACCACCACACCGGCGAUGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63320 1 0.006718
Target:  5'- cGUGGUGACCACCACACCGGCGAaGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUGGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 64109 0.84 0.083798
Target:  5'- ----aGACCccgACCACACCGGCGACGCCc -3'
miRNA:   3'- cgccaCUGG---UGGUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 106506 0.8 0.135965
Target:  5'- gGCGGUGGcCCGgCACGCCauGGCGGcCGCCg -3'
miRNA:   3'- -CGCCACU-GGUgGUGUGG--CCGCU-GCGG- -5'
2939 3' -59.5 NC_001493.1 + 63149 0.8 0.154015
Target:  5'- cGUGGUGACUACCGCGaCGGUGAaGCCc -3'
miRNA:   3'- -CGCCACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 62708 0.78 0.198639
Target:  5'- cGCGGgagccaacggcaccgUGACCACCACGaCGGCGAaGCCc -3'
miRNA:   3'- -CGCC---------------ACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 62666 0.78 0.198639
Target:  5'- cGCGGgagccaacggcaccgUGACCACCACGaCGGCGAaGCCc -3'
miRNA:   3'- -CGCC---------------ACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 62750 0.78 0.198639
Target:  5'- cGCGGgagccaacggcaccgUGACCACCACGaCGGCGAaGCCc -3'
miRNA:   3'- -CGCC---------------ACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 62792 0.78 0.198639
Target:  5'- cGCGGgagccaacggcaccgUGACCACCACGaCGGCGAaGCCc -3'
miRNA:   3'- -CGCC---------------ACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 63038 0.77 0.2325
Target:  5'- aGCGaccgguaccGUGACCACCACGaCGGCGAaGCCc -3'
miRNA:   3'- -CGC---------CACUGGUGGUGUgGCCGCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.