miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 3' -59.5 NC_001493.1 + 4545 0.7 0.512379
Target:  5'- uCGGUGACC-CC-CGCCGcuGCcGCGCCc -3'
miRNA:   3'- cGCCACUGGuGGuGUGGC--CGcUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 5675 0.67 0.727592
Target:  5'- -aGGUGACCAgcuCCGCAUCGaGaGugGCa -3'
miRNA:   3'- cgCCACUGGU---GGUGUGGC-CgCugCGg -5'
2939 3' -59.5 NC_001493.1 + 8473 0.69 0.589871
Target:  5'- aGCGGgcacGGCgCGCCACGgagucacuCCuGUGGCGCCg -3'
miRNA:   3'- -CGCCa---CUG-GUGGUGU--------GGcCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 10754 0.67 0.717995
Target:  5'- aGUGGaUGGCCGugUCguggGCAUCGGCGAUcgGCCa -3'
miRNA:   3'- -CGCC-ACUGGU--GG----UGUGGCCGCUG--CGG- -5'
2939 3' -59.5 NC_001493.1 + 13033 0.74 0.342069
Target:  5'- cGUGGUGACCucCCugguguuCGCCGGgGuCGCCc -3'
miRNA:   3'- -CGCCACUGGu-GGu------GUGGCCgCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 16618 0.67 0.726636
Target:  5'- gGCGGU--UUGCCACACCGGCaucuaugGAC-CCg -3'
miRNA:   3'- -CGCCAcuGGUGGUGUGGCCG-------CUGcGG- -5'
2939 3' -59.5 NC_001493.1 + 17759 0.67 0.698601
Target:  5'- uCGG-GGCCGCaACGCgGGCG-UGCCc -3'
miRNA:   3'- cGCCaCUGGUGgUGUGgCCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 23523 0.76 0.238035
Target:  5'- cGCGGcacCCGCCACACCacaGGCGagcGCGCCg -3'
miRNA:   3'- -CGCCacuGGUGGUGUGG---CCGC---UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 24379 0.68 0.639418
Target:  5'- -gGGUcGCCAaCCAC-UCGGUGACGCg -3'
miRNA:   3'- cgCCAcUGGU-GGUGuGGCCGCUGCGg -5'
2939 3' -59.5 NC_001493.1 + 26149 0.7 0.521865
Target:  5'- cGCGGUG-CCGagaaC-CACCGGUGA-GCCu -3'
miRNA:   3'- -CGCCACuGGUg---GuGUGGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 28045 0.68 0.639418
Target:  5'- uGCGGgugGAUCgACCGgACCGGgCGGcCGUCu -3'
miRNA:   3'- -CGCCa--CUGG-UGGUgUGGCC-GCU-GCGG- -5'
2939 3' -59.5 NC_001493.1 + 28445 0.7 0.55946
Target:  5'- cGCGGaGAgCGCCACguugcgaGCgaGGCGGCGCUc -3'
miRNA:   3'- -CGCCaCUgGUGGUG-------UGg-CCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 28739 0.67 0.712203
Target:  5'- uCGGUGGCCGucacgaguuccccacUCACGgUGGCGAguCGCUg -3'
miRNA:   3'- cGCCACUGGU---------------GGUGUgGCCGCU--GCGG- -5'
2939 3' -59.5 NC_001493.1 + 29900 0.66 0.774248
Target:  5'- uCGG-GACCACCGugauggaccucuCGaaGGCGAacCGCCa -3'
miRNA:   3'- cGCCaCUGGUGGU------------GUggCCGCU--GCGG- -5'
2939 3' -59.5 NC_001493.1 + 30205 0.67 0.698601
Target:  5'- cGCGGagcgGGCCGCuUACG-CGGCGGagcgaGCCg -3'
miRNA:   3'- -CGCCa---CUGGUG-GUGUgGCCGCUg----CGG- -5'
2939 3' -59.5 NC_001493.1 + 31745 0.76 0.249436
Target:  5'- aCGGUGACagagAUACUGGCGGCGCCa -3'
miRNA:   3'- cGCCACUGguggUGUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 31887 0.67 0.708328
Target:  5'- cGCGGUGACCGuguguuCCACgguCGGUGccgauGCGCUc -3'
miRNA:   3'- -CGCCACUGGU------GGUGug-GCCGC-----UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 32020 0.66 0.782359
Target:  5'- aCGGUG-CCACCGCgcucugggauaggACCGuGCGAuaUGCg -3'
miRNA:   3'- cGCCACuGGUGGUG-------------UGGC-CGCU--GCGg -5'
2939 3' -59.5 NC_001493.1 + 32267 0.67 0.727592
Target:  5'- aCGGUGACaAUCGCGgucCCGGCGAC-Ca -3'
miRNA:   3'- cGCCACUGgUGGUGU---GGCCGCUGcGg -5'
2939 3' -59.5 NC_001493.1 + 33642 0.75 0.306366
Target:  5'- gGCGGUGAUguUCACACacuCGGCGAaGCCc -3'
miRNA:   3'- -CGCCACUGguGGUGUG---GCCGCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.