miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 3' -59.5 NC_001493.1 + 87004 0.69 0.619565
Target:  5'- gGUGGcgUGACgACCGgACCcgacGGUGGCGCUg -3'
miRNA:   3'- -CGCC--ACUGgUGGUgUGG----CCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 46054 0.7 0.540071
Target:  5'- gGUGGUGACCAcgaacacuguguuCCAgaacaguuCGCUGGacaGGCGCCu -3'
miRNA:   3'- -CGCCACUGGU-------------GGU--------GUGGCCg--CUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 34229 0.7 0.550709
Target:  5'- cGCGGUGcCgGCCGCGuuGaucUGACGCCc -3'
miRNA:   3'- -CGCCACuGgUGGUGUggCc--GCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 94709 0.69 0.570207
Target:  5'- cCGGUGGgUGCCACGggGGCGAUgGCCg -3'
miRNA:   3'- cGCCACUgGUGGUGUggCCGCUG-CGG- -5'
2939 3' -59.5 NC_001493.1 + 89621 0.69 0.580022
Target:  5'- cUGGUGAUgACCgaacagucGCGCaCGGCGGCGUUc -3'
miRNA:   3'- cGCCACUGgUGG--------UGUG-GCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63929 0.69 0.588884
Target:  5'- cGCGGUGucguugGCUcCCGCgggcgucGCCGGUGugGUCg -3'
miRNA:   3'- -CGCCAC------UGGuGGUG-------UGGCCGCugCGG- -5'
2939 3' -59.5 NC_001493.1 + 63747 0.69 0.608658
Target:  5'- uGUGGUGGUCACCGCGgugucguuggcucCCgcgGGCGuCGCCg -3'
miRNA:   3'- -CGCCACUGGUGGUGU-------------GG---CCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 63792 0.69 0.608658
Target:  5'- uGUGGUGGUCACCGCGgugucguuggcucCCgcgGGCGuCGCCg -3'
miRNA:   3'- -CGCCACUGGUGGUGU-------------GG---CCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 60081 0.69 0.609649
Target:  5'- cCGGUGACCGugaCGgGuuGGCGAgGUCg -3'
miRNA:   3'- cGCCACUGGUg--GUgUggCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 26149 0.7 0.521865
Target:  5'- cGCGGUG-CCGagaaC-CACCGGUGA-GCCu -3'
miRNA:   3'- -CGCCACuGGUg---GuGUGGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 120099 0.7 0.512379
Target:  5'- uCGGUGACC-CC-CGCCGcuGCcGCGCCc -3'
miRNA:   3'- cGCCACUGGuGGuGUGGC--CGcUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 4545 0.7 0.512379
Target:  5'- uCGGUGACC-CC-CGCCGcuGCcGCGCCc -3'
miRNA:   3'- cGCCACUGGuGGuGUGGC--CGcUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 93325 0.75 0.27991
Target:  5'- -gGGUGACCGCgCGgACCGGUG-CGCUc -3'
miRNA:   3'- cgCCACUGGUG-GUgUGGCCGCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 13033 0.74 0.342069
Target:  5'- cGUGGUGACCucCCugguguuCGCCGGgGuCGCCc -3'
miRNA:   3'- -CGCCACUGGu-GGu------GUGGCCgCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 128588 0.74 0.342069
Target:  5'- cGUGGUGACCucCCugguguuCGCCGGgGuCGCCc -3'
miRNA:   3'- -CGCCACUGGu-GGu------GUGGCCgCuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 54813 0.73 0.38068
Target:  5'- cCGGUGACCuauccgaauCCAUACCGGguCGugGCa -3'
miRNA:   3'- cGCCACUGGu--------GGUGUGGCC--GCugCGg -5'
2939 3' -59.5 NC_001493.1 + 95584 0.72 0.413597
Target:  5'- cGCGGUGAuaUCAUCACACCGGgcgagaGACGg- -3'
miRNA:   3'- -CGCCACU--GGUGGUGUGGCCg-----CUGCgg -5'
2939 3' -59.5 NC_001493.1 + 36884 0.72 0.422096
Target:  5'- gGCGGU--CCGCCcCGCCGGUGuGCGUCu -3'
miRNA:   3'- -CGCCAcuGGUGGuGUGGCCGC-UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 44520 0.71 0.500155
Target:  5'- cCGGUGcgacccagcgacuuACuCAUCGCACCGGCGAggUGCUg -3'
miRNA:   3'- cGCCAC--------------UG-GUGGUGUGGCCGCU--GCGG- -5'
2939 3' -59.5 NC_001493.1 + 56538 0.71 0.502965
Target:  5'- uGUGGcGACCGCCAgugcUGCCGuCGACGCg -3'
miRNA:   3'- -CGCCaCUGGUGGU----GUGGCcGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.