miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 5' -55.9 NC_001493.1 + 63858 1.08 0.003286
Target:  5'- aACGACACCGCGAACGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCUUGCUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63801 0.99 0.014233
Target:  5'- aACGACACCGCGAACGGCACCGcGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCUUGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 63257 0.91 0.04484
Target:  5'- gGCGAUGCCcgcgggaGCGAACGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGG-------CGCUUGCUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63302 0.85 0.11122
Target:  5'- gGCGAaGCCcgcgggaGCGAACGGCACCGUGGUGa -3'
miRNA:   3'- -UGCUgUGG-------CGCUUGCUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63193 0.85 0.119651
Target:  5'- aACGACACCGCGAaugucacgaaGCccacgggagcgaccGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCU----------UG--------------CUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63498 0.85 0.119651
Target:  5'- aACGACACCGCGAaugucacgaaGCccgcgggaucgaccGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCU----------UG--------------CUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63702 0.85 0.119651
Target:  5'- aACGACACCGCGAaugucacgauGCccgcgggagcgaccGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCU----------UG--------------CUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63579 0.85 0.119651
Target:  5'- aACGACACCGCGAaugucacgauGCccgcgggagcgaccGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGGCGCU----------UG--------------CUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63436 0.84 0.136903
Target:  5'- gGCGAUGCCcacgggaGCGAcCGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGG-------CGCUuGCUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63347 0.84 0.136903
Target:  5'- gGCGAUGCCcacgggaGCGAcCGACACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGG-------CGCUuGCUGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63445 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63814 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63897 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63922 0.82 0.177067
Target:  5'- gGCGACGcCCGCGGgagccaACGACACCGcGGUGa -3'
miRNA:   3'- -UGCUGU-GGCGCU------UGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 63967 0.82 0.177067
Target:  5'- gGCGACGcCCGCGGgagccaACGACACCGcGGUGa -3'
miRNA:   3'- -UGCUGU-GGCGCU------UGCUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 63568 0.79 0.274734
Target:  5'- uUGGCucCCGUGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63391 0.78 0.315755
Target:  5'- gGCGAUGCCcacGgGAGCGaccGCACCGUGGUGa -3'
miRNA:   3'- -UGCUGUGG---CgCUUGC---UGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 44078 0.76 0.368435
Target:  5'- uGCG-CGCCGCGuccaugaacgcgaAGCG-CACCGUGGUGa -3'
miRNA:   3'- -UGCuGUGGCGC-------------UUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63856 0.76 0.377371
Target:  5'- uUGGCucCCGCGGGCG-UGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 64074 0.76 0.385621
Target:  5'- aACGACACCGCGAauaucaccacgGCGACGCCcgcgGGa- -3'
miRNA:   3'- -UGCUGUGGCGCU-----------UGCUGUGGca--CCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.