miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 5' -55.9 NC_001493.1 + 62648 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62480 0.69 0.753167
Target:  5'- cCGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 67820 0.69 0.772117
Target:  5'- cACGGCAUCGCu--CGACGCCGaGGa- -3'
miRNA:   3'- -UGCUGUGGCGcuuGCUGUGGCaCCac -5'
2939 5' -55.9 NC_001493.1 + 24545 0.68 0.834066
Target:  5'- cACGGCACCguaGCGGucACGGCcguucCCGUGGa- -3'
miRNA:   3'- -UGCUGUGG---CGCU--UGCUGu----GGCACCac -5'
2939 5' -55.9 NC_001493.1 + 63939 0.67 0.842247
Target:  5'- uUGGCucCCGCGGGCGuCGCCGgugUGGUc -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGC---ACCAc -5'
2939 5' -55.9 NC_001493.1 + 95418 0.67 0.842247
Target:  5'- -gGACcCCGCGAGauACAUCGUGGa- -3'
miRNA:   3'- ugCUGuGGCGCUUgcUGUGGCACCac -5'
2939 5' -55.9 NC_001493.1 + 62522 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62564 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62606 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 27880 0.7 0.723968
Target:  5'- cACGAcCACCgGCGuACGAU-CCGUGGUa -3'
miRNA:   3'- -UGCU-GUGG-CGCuUGCUGuGGCACCAc -5'
2939 5' -55.9 NC_001493.1 + 36608 0.7 0.714066
Target:  5'- cACuGCGCUGCuGGugGugGCCGUGGg- -3'
miRNA:   3'- -UGcUGUGGCG-CUugCugUGGCACCac -5'
2939 5' -55.9 NC_001493.1 + 46128 0.7 0.708091
Target:  5'- cUGACGagguuuacauuuacuCCGUGAACGGCGCCGUuGGg- -3'
miRNA:   3'- uGCUGU---------------GGCGCUUGCUGUGGCA-CCac -5'
2939 5' -55.9 NC_001493.1 + 63814 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63897 0.82 0.172664
Target:  5'- uUGGCucCCGCGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63568 0.79 0.274734
Target:  5'- uUGGCucCCGUGGGCGuCGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63856 0.76 0.377371
Target:  5'- uUGGCucCCGCGGGCG-UGCCGUGGUGa -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63724 0.73 0.551993
Target:  5'- uUGGCucCCGCGGGCGuCGCCGgugUGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGC---ACCAC- -5'
2939 5' -55.9 NC_001493.1 + 63769 0.73 0.551993
Target:  5'- uUGGCucCCGCGGGCGuCGCCGaugUGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGC---ACCAC- -5'
2939 5' -55.9 NC_001493.1 + 58664 0.72 0.592313
Target:  5'- uCGGC-CCGCgGGACGACACCGaaggGGUu -3'
miRNA:   3'- uGCUGuGGCG-CUUGCUGUGGCa---CCAc -5'
2939 5' -55.9 NC_001493.1 + 63058 0.72 0.602481
Target:  5'- uUGGCucCCGCGGGCGuCGCCGgugcGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGCuGUGGCa---CCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.