miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 5' -55.9 NC_001493.1 + 1318 0.7 0.714066
Target:  5'- aGCGuCuCCGCGGAagcgGGCACCGcGGUGa -3'
miRNA:   3'- -UGCuGuGGCGCUUg---CUGUGGCaCCAC- -5'
2939 5' -55.9 NC_001493.1 + 23523 0.66 0.899702
Target:  5'- cGCGGCACCcgccacaccacagGCGAGCG-CGCCGUuGa- -3'
miRNA:   3'- -UGCUGUGG-------------CGCUUGCuGUGGCAcCac -5'
2939 5' -55.9 NC_001493.1 + 24283 0.66 0.909046
Target:  5'- aGCGAUucuCCGUGAACGcgacgaaucucggacACAucgccagccccCCGUGGUGu -3'
miRNA:   3'- -UGCUGu--GGCGCUUGC---------------UGU-----------GGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 24545 0.68 0.834066
Target:  5'- cACGGCACCguaGCGGucACGGCcguucCCGUGGa- -3'
miRNA:   3'- -UGCUGUGG---CGCU--UGCUGu----GGCACCac -5'
2939 5' -55.9 NC_001493.1 + 27880 0.7 0.723968
Target:  5'- cACGAcCACCgGCGuACGAU-CCGUGGUa -3'
miRNA:   3'- -UGCU-GUGG-CGCuUGCUGuGGCACCAc -5'
2939 5' -55.9 NC_001493.1 + 28921 0.67 0.865626
Target:  5'- cUGACGCaGCGAcuCGcCACCGUGaGUGg -3'
miRNA:   3'- uGCUGUGgCGCUu-GCuGUGGCAC-CAC- -5'
2939 5' -55.9 NC_001493.1 + 30247 0.68 0.817161
Target:  5'- gGCGACgAUCGUGAGCaACACCGaGGg- -3'
miRNA:   3'- -UGCUG-UGGCGCUUGcUGUGGCaCCac -5'
2939 5' -55.9 NC_001493.1 + 31087 0.66 0.91843
Target:  5'- cCGuCACCGCGGcCGuCACCG-GGa- -3'
miRNA:   3'- uGCuGUGGCGCUuGCuGUGGCaCCac -5'
2939 5' -55.9 NC_001493.1 + 36608 0.7 0.714066
Target:  5'- cACuGCGCUGCuGGugGugGCCGUGGg- -3'
miRNA:   3'- -UGcUGUGGCG-CUugCugUGGCACCac -5'
2939 5' -55.9 NC_001493.1 + 40457 0.66 0.887123
Target:  5'- aGCuGgACCGCG-ACGAUACCGcacgccUGGUGc -3'
miRNA:   3'- -UGcUgUGGCGCuUGCUGUGGC------ACCAC- -5'
2939 5' -55.9 NC_001493.1 + 44078 0.76 0.368435
Target:  5'- uGCG-CGCCGCGuccaugaacgcgaAGCG-CACCGUGGUGa -3'
miRNA:   3'- -UGCuGUGGCGC-------------UUGCuGUGGCACCAC- -5'
2939 5' -55.9 NC_001493.1 + 46128 0.7 0.708091
Target:  5'- cUGACGagguuuacauuuacuCCGUGAACGGCGCCGUuGGg- -3'
miRNA:   3'- uGCUGU---------------GGCGCUUGCUGUGGCA-CCac -5'
2939 5' -55.9 NC_001493.1 + 48627 0.69 0.772117
Target:  5'- cGCGGCgAUCGUGggUGGCACgGUcuuGGUGu -3'
miRNA:   3'- -UGCUG-UGGCGCuuGCUGUGgCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 53546 0.68 0.817161
Target:  5'- uCGcCACCGCgguGAugGACuCCGUGGa- -3'
miRNA:   3'- uGCuGUGGCG---CUugCUGuGGCACCac -5'
2939 5' -55.9 NC_001493.1 + 58664 0.72 0.592313
Target:  5'- uCGGC-CCGCgGGACGACACCGaaggGGUu -3'
miRNA:   3'- uGCUGuGGCG-CUUGCUGUGGCa---CCAc -5'
2939 5' -55.9 NC_001493.1 + 62438 0.67 0.873008
Target:  5'- cCGugGCCGUGccCGugGCCGUGcccGUGc -3'
miRNA:   3'- uGCugUGGCGCuuGCugUGGCAC---CAC- -5'
2939 5' -55.9 NC_001493.1 + 62480 0.69 0.753167
Target:  5'- cCGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62522 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62564 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5'
2939 5' -55.9 NC_001493.1 + 62606 0.67 0.850239
Target:  5'- uUGGCucCCGCGGGCuuCGCCGUcguGGUGg -3'
miRNA:   3'- uGCUGu-GGCGCUUGcuGUGGCA---CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.