miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 124709 1.1 0.000787
Target:  5'- gGCUACGCGCCCGGGCGCUUCCAGCAGg -3'
miRNA:   3'- -CGAUGCGCGGGCCCGCGAAGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 87174 0.8 0.109789
Target:  5'- aCUACGCGCCCGcGGCGCcgCC-GCAGc -3'
miRNA:   3'- cGAUGCGCGGGC-CCGCGaaGGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 20174 0.78 0.145094
Target:  5'- ---cCGCGCCCGGGuCGCggCCGGUAGa -3'
miRNA:   3'- cgauGCGCGGGCCC-GCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 122386 0.78 0.152539
Target:  5'- --gGCGCGCCgCGGGCGCgcgCUGGCGGc -3'
miRNA:   3'- cgaUGCGCGG-GCCCGCGaa-GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 3714 0.77 0.168475
Target:  5'- cUUGCGcCGCUCGGGCGCUggguccgggCCGGCGGc -3'
miRNA:   3'- cGAUGC-GCGGGCCCGCGAa--------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 50027 0.75 0.242109
Target:  5'- cGCgcgGCGCcCCCGGGCGCggCCAuaaaagccuGCAGa -3'
miRNA:   3'- -CGa--UGCGcGGGCCCGCGaaGGU---------CGUC- -5'
29390 3' -60.7 NC_006151.1 + 17094 0.75 0.242109
Target:  5'- gGC-GCGCGCCCgucgGGGCGCcgggggcUCCGGCGGc -3'
miRNA:   3'- -CGaUGCGCGGG----CCCGCGa------AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 83859 0.74 0.247868
Target:  5'- -aUGCGCauCCCGGcGCGCUUCCGGgCGGg -3'
miRNA:   3'- cgAUGCGc-GGGCC-CGCGAAGGUC-GUC- -5'
29390 3' -60.7 NC_006151.1 + 123001 0.74 0.278376
Target:  5'- --gACGgGCCCGGcGCGCccccgCCGGCGGa -3'
miRNA:   3'- cgaUGCgCGGGCC-CGCGaa---GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 103389 0.73 0.304194
Target:  5'- gGCUGCGCGCgcugCUGGGCGaCUUugccacgcugggcCCGGCGGu -3'
miRNA:   3'- -CGAUGCGCG----GGCCCGC-GAA-------------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 137867 0.73 0.311801
Target:  5'- -gUACGCGCaCGGGCGCagCCuGCGGc -3'
miRNA:   3'- cgAUGCGCGgGCCCGCGaaGGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 132166 0.73 0.318842
Target:  5'- aGCUGCGCGgCCGgcaccGGCGCgcccgaCAGCAGc -3'
miRNA:   3'- -CGAUGCGCgGGC-----CCGCGaag---GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 81350 0.73 0.318842
Target:  5'- cGCcgcCGCGCCCGGG-GCc-CCGGCGGg -3'
miRNA:   3'- -CGau-GCGCGGGCCCgCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 10621 0.72 0.326
Target:  5'- --cGCGCGCCCGcGuGCGCUcgugCCGGCGc -3'
miRNA:   3'- cgaUGCGCGGGC-C-CGCGAa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 100466 0.72 0.333278
Target:  5'- cGCUGCGCGagugCGaGGCGCUgggCCuGCAGg -3'
miRNA:   3'- -CGAUGCGCgg--GC-CCGCGAa--GGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 137763 0.72 0.340674
Target:  5'- --cGCG-GCCUGGcGCGCgugcUCCAGCAGg -3'
miRNA:   3'- cgaUGCgCGGGCC-CGCGa---AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 106467 0.72 0.343665
Target:  5'- aGCUguGgGCGCCCuGGGCGCacacggagacgggCCAGCGGc -3'
miRNA:   3'- -CGA--UgCGCGGG-CCCGCGaa-----------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 18657 0.72 0.348188
Target:  5'- --aGC-CGCCCGGGCGUcgUCCGGCc- -3'
miRNA:   3'- cgaUGcGCGGGCCCGCGa-AGGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 63882 0.72 0.348188
Target:  5'- aGCgugucCGCGUCgGGGCGCU-CgAGCAGg -3'
miRNA:   3'- -CGau---GCGCGGgCCCGCGAaGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 17712 0.72 0.35582
Target:  5'- uGCUGugUGCGCCCGGGUGCg-CCGGgGc -3'
miRNA:   3'- -CGAU--GCGCGGGCCCGCGaaGGUCgUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.