miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 2302 0.7 0.429635
Target:  5'- gGCgACgGCGCCCGGGgucaGCa-CCAGCGGg -3'
miRNA:   3'- -CGaUG-CGCGGGCCCg---CGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 3683 0.68 0.579739
Target:  5'- gGCgGCGgGcCCCGGGCGCg--CGGCGc -3'
miRNA:   3'- -CGaUGCgC-GGGCCCGCGaagGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 3714 0.77 0.168475
Target:  5'- cUUGCGcCGCUCGGGCGCUggguccgggCCGGCGGc -3'
miRNA:   3'- cGAUGC-GCGGGCCCGCGAa--------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 3952 0.71 0.371433
Target:  5'- gGCUccGCGgGCCCGGGCcGCg--CGGCGGc -3'
miRNA:   3'- -CGA--UGCgCGGGCCCG-CGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 4320 0.67 0.60954
Target:  5'- gGC-ACGCGgCCGGGCuGCg--CGGCGGc -3'
miRNA:   3'- -CGaUGCGCgGGCCCG-CGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 4406 0.68 0.54053
Target:  5'- cGCgGCGCgGCCCGGGUaggccaugucgGCguaggcCCGGCGGa -3'
miRNA:   3'- -CGaUGCG-CGGGCCCG-----------CGaa----GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 5343 0.69 0.502253
Target:  5'- gGCggaGgGCGCCCucuccGGCGCggcgCCGGCGGg -3'
miRNA:   3'- -CGa--UgCGCGGGc----CCGCGaa--GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 5851 0.68 0.550259
Target:  5'- gGCUGCggagggggacgaGCGCCCGGG-GCcgCCGGgGGc -3'
miRNA:   3'- -CGAUG------------CGCGGGCCCgCGaaGGUCgUC- -5'
29390 3' -60.7 NC_006151.1 + 7659 0.69 0.530861
Target:  5'- cGCUcggcGCGCGCUCcgaGGGCGCc-CCAGCc- -3'
miRNA:   3'- -CGA----UGCGCGGG---CCCGCGaaGGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 8254 0.66 0.679295
Target:  5'- gGCcgGCGCG-CCGGGaCGCcccUCCGGgGGa -3'
miRNA:   3'- -CGa-UGCGCgGGCCC-GCGa--AGGUCgUC- -5'
29390 3' -60.7 NC_006151.1 + 9054 0.66 0.659431
Target:  5'- --cGCGUGCuCCGGGgGCgccggCCGGCc- -3'
miRNA:   3'- cgaUGCGCG-GGCCCgCGaa---GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 9873 0.66 0.669377
Target:  5'- aGCagaa-GCCgGGGCGCUUCCuccccGGCGGu -3'
miRNA:   3'- -CGaugcgCGGgCCCGCGAAGG-----UCGUC- -5'
29390 3' -60.7 NC_006151.1 + 10498 0.7 0.465208
Target:  5'- gGC-GCGCGCCCGccgccgcaGGCGCguccCCGGCGc -3'
miRNA:   3'- -CGaUGCGCGGGC--------CCGCGaa--GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 10621 0.72 0.326
Target:  5'- --cGCGCGCCCGcGuGCGCUcgugCCGGCGc -3'
miRNA:   3'- cgaUGCGCGGGC-C-CGCGAa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 10705 0.67 0.649464
Target:  5'- cGUU-CGCGCaCCGcGGCGC---CAGCAGg -3'
miRNA:   3'- -CGAuGCGCG-GGC-CCGCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 11212 0.66 0.669377
Target:  5'- --gGCGCGUCCGGGaagGCUUCUccCGGg -3'
miRNA:   3'- cgaUGCGCGGGCCCg--CGAAGGucGUC- -5'
29390 3' -60.7 NC_006151.1 + 17094 0.75 0.242109
Target:  5'- gGC-GCGCGCCCgucgGGGCGCcgggggcUCCGGCGGc -3'
miRNA:   3'- -CGaUGCGCGGG----CCCGCGa------AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 17712 0.72 0.35582
Target:  5'- uGCUGugUGCGCCCGGGUGCg-CCGGgGc -3'
miRNA:   3'- -CGAU--GCGCGGGCCCGCGaaGGUCgUc -5'
29390 3' -60.7 NC_006151.1 + 18657 0.72 0.348188
Target:  5'- --aGC-CGCCCGGGCGUcgUCCGGCc- -3'
miRNA:   3'- cgaUGcGCGGGCCCGCGa-AGGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 20174 0.78 0.145094
Target:  5'- ---cCGCGCCCGGGuCGCggCCGGUAGa -3'
miRNA:   3'- cgauGCGCGGGCCC-GCGaaGGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.