miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 20716 0.7 0.47434
Target:  5'- cGCguccgGCGgGgCCGGGCGCgagacgaaCAGCAGc -3'
miRNA:   3'- -CGa----UGCgCgGGCCCGCGaag-----GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 20770 0.67 0.629498
Target:  5'- gGCggACGCGCgCCGGGCgagcggcucgcGCUUgC-GCAGa -3'
miRNA:   3'- -CGa-UGCGCG-GGCCCG-----------CGAAgGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 22319 0.68 0.550259
Target:  5'- --aGCGuCGUCCGGGCGa--CCAGCGc -3'
miRNA:   3'- cgaUGC-GCGGGCCCGCgaaGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 24666 0.68 0.54053
Target:  5'- --cACGCaCCCGGcgucGCGCaugUCCAGCGGc -3'
miRNA:   3'- cgaUGCGcGGGCC----CGCGa--AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 26359 0.72 0.363568
Target:  5'- gGCgggcCGCGUCgGGGCGCgcgucccCCGGCGGg -3'
miRNA:   3'- -CGau--GCGCGGgCCCGCGaa-----GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 26981 0.71 0.408231
Target:  5'- cGCUGCGCagcggggcgcucuGCUCGGGCgagaGCUggagcagggccugCCAGCAGg -3'
miRNA:   3'- -CGAUGCG-------------CGGGCCCG----CGAa------------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 27175 0.68 0.54053
Target:  5'- cGCcGCGUGUCgGGGCGCcagggggCCGcGCAGa -3'
miRNA:   3'- -CGaUGCGCGGgCCCGCGaa-----GGU-CGUC- -5'
29390 3' -60.7 NC_006151.1 + 28087 0.66 0.699011
Target:  5'- ---uCGuCGUCCGGGCGUccUCgAGCGGg -3'
miRNA:   3'- cgauGC-GCGGGCCCGCGa-AGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 30226 0.68 0.579739
Target:  5'- aGCUcucaGgGCCCGGG-GUUgcgCCGGCGGg -3'
miRNA:   3'- -CGAug--CgCGGGCCCgCGAa--GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 30738 0.68 0.56004
Target:  5'- --cGCGgGCCCGGaGUGCcgCgGGCGGg -3'
miRNA:   3'- cgaUGCgCGGGCC-CGCGaaGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 31747 0.69 0.511717
Target:  5'- cGCgccggggACGCGCCugcggcggCGGGCGCgcgCCgGGCGGc -3'
miRNA:   3'- -CGa------UGCGCGG--------GCCCGCGaa-GG-UCGUC- -5'
29390 3' -60.7 NC_006151.1 + 33200 0.67 0.629498
Target:  5'- gGCcgGCcgGCGCCCccggagcacgcgGGGCGCc-CCGGCGGg -3'
miRNA:   3'- -CGa-UG--CGCGGG------------CCCGCGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 33943 0.68 0.579739
Target:  5'- --cGCGCGcCCCGGGgGCUcggGGCGGg -3'
miRNA:   3'- cgaUGCGC-GGGCCCgCGAaggUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 38303 0.67 0.649464
Target:  5'- cGCcGCGCgGCCCGGGCccgcggagcccGCgcCCGGCc- -3'
miRNA:   3'- -CGaUGCG-CGGGCCCG-----------CGaaGGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 38574 0.67 0.60954
Target:  5'- cGCcGCGCGCCCGGGgccCGCcgCCccggggacGGCGa -3'
miRNA:   3'- -CGaUGCGCGGGCCC---GCGaaGG--------UCGUc -5'
29390 3' -60.7 NC_006151.1 + 38812 0.66 0.689175
Target:  5'- aGCacccCGCGCCCGacGGCGgCUUCCGccGCGu -3'
miRNA:   3'- -CGau--GCGCGGGC--CCGC-GAAGGU--CGUc -5'
29390 3' -60.7 NC_006151.1 + 39470 0.68 0.550259
Target:  5'- -gUGCGCugGCCCGGGUGCcgcgagcUCCGcGCGGc -3'
miRNA:   3'- cgAUGCG--CGGGCCCGCGa------AGGU-CGUC- -5'
29390 3' -60.7 NC_006151.1 + 39969 0.66 0.659431
Target:  5'- cGCcguCGcCGCCgCGGGCGCcccgCCGGCc- -3'
miRNA:   3'- -CGau-GC-GCGG-GCCCGCGaa--GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 45562 0.66 0.699011
Target:  5'- --gGCGCGCCCGGGCcaucgUCCcgGGaCGGc -3'
miRNA:   3'- cgaUGCGCGGGCCCGcga--AGG--UC-GUC- -5'
29390 3' -60.7 NC_006151.1 + 46560 0.69 0.530861
Target:  5'- ----gGCGCCCaGGCGCUccCCGcGCAGg -3'
miRNA:   3'- cgaugCGCGGGcCCGCGAa-GGU-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.