miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 55419 0.72 0.362788
Target:  5'- cCUGCGCGCCgcgcaggCGGGCGCggacgggaCCGGCGc -3'
miRNA:   3'- cGAUGCGCGG-------GCCCGCGaa------GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 83361 0.72 0.363568
Target:  5'- gGC-GCGCGCgCGGGCGCgcaggcgCC-GCAGg -3'
miRNA:   3'- -CGaUGCGCGgGCCCGCGaa-----GGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 26359 0.72 0.363568
Target:  5'- gGCgggcCGCGUCgGGGCGCgcgucccCCGGCGGg -3'
miRNA:   3'- -CGau--GCGCGGgCCCGCGaa-----GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 3952 0.71 0.371433
Target:  5'- gGCUccGCGgGCCCGGGCcGCg--CGGCGGc -3'
miRNA:   3'- -CGA--UGCgCGGGCCCG-CGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 113031 0.71 0.379413
Target:  5'- --cGCGUGCgCCGGGUGCUgCgCGGCGGc -3'
miRNA:   3'- cgaUGCGCG-GGCCCGCGAaG-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 82673 0.71 0.379413
Target:  5'- uGCgGCGCGCCgCGGGCGagggCGGCGGc -3'
miRNA:   3'- -CGaUGCGCGG-GCCCGCgaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 117389 0.71 0.387506
Target:  5'- gGCcACGCGCuuGccgcaGGCGCUgagccCCAGCAGc -3'
miRNA:   3'- -CGaUGCGCGggC-----CCGCGAa----GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 114893 0.71 0.395713
Target:  5'- aGCUucccggGCGCgagGCCCGGGCGCacggccCCGGCGu -3'
miRNA:   3'- -CGA------UGCG---CGGGCCCGCGaa----GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 64959 0.71 0.404031
Target:  5'- cGCUGCGgGCgcaggCCGaGCGCcacgUCCAGCAGc -3'
miRNA:   3'- -CGAUGCgCG-----GGCcCGCGa---AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 96654 0.71 0.404031
Target:  5'- gGCgGCGaggGCCCGGGCGacgUCCucggGGCAGg -3'
miRNA:   3'- -CGaUGCg--CGGGCCCGCga-AGG----UCGUC- -5'
29390 3' -60.7 NC_006151.1 + 119825 0.71 0.404031
Target:  5'- cGCUGCGCGCUCu-GCGCgacacggUCgAGCAGg -3'
miRNA:   3'- -CGAUGCGCGGGccCGCGa------AGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 121189 0.71 0.404031
Target:  5'- uGCUgcACGCGCUCgGGGCGCgcaCgCAGCAc -3'
miRNA:   3'- -CGA--UGCGCGGG-CCCGCGaa-G-GUCGUc -5'
29390 3' -60.7 NC_006151.1 + 26981 0.71 0.408231
Target:  5'- cGCUGCGCagcggggcgcucuGCUCGGGCgagaGCUggagcagggccugCCAGCAGg -3'
miRNA:   3'- -CGAUGCG-------------CGGGCCCG----CGAa------------GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 132807 0.71 0.412459
Target:  5'- cGCUgguacaGCGCGUCCGGGCugGCcgCCcGCGGg -3'
miRNA:   3'- -CGA------UGCGCGGGCCCG--CGaaGGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 130097 0.7 0.426166
Target:  5'- aGCUcGCGCuccucggccgugaaGCCCggguucuggccguGGGCGCgcgCCAGCAGg -3'
miRNA:   3'- -CGA-UGCG--------------CGGG-------------CCCGCGaa-GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 2302 0.7 0.429635
Target:  5'- gGCgACgGCGCCCGGGgucaGCa-CCAGCGGg -3'
miRNA:   3'- -CGaUG-CGCGGGCCCg---CGaaGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 111318 0.7 0.429635
Target:  5'- gGCcGCGUGCCCGGGCacggGCgagaugacggUCgGGCGGa -3'
miRNA:   3'- -CGaUGCGCGGGCCCG----CGa---------AGgUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 103943 0.7 0.43838
Target:  5'- aGCUGCagaagaugGCGCUCGcGGCGCg-CCAGCGc -3'
miRNA:   3'- -CGAUG--------CGCGGGC-CCGCGaaGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 130369 0.7 0.447225
Target:  5'- gGCcGCGCGCgCCGcGGCGU--CCAGCGc -3'
miRNA:   3'- -CGaUGCGCG-GGC-CCGCGaaGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 68870 0.7 0.447225
Target:  5'- aGCa--GCGCCgGGGCGCgcCCGGCc- -3'
miRNA:   3'- -CGaugCGCGGgCCCGCGaaGGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.