miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 102273 0.66 0.689175
Target:  5'- --gGCGCGCugCCGGaGCGCggcCCGGcCGGg -3'
miRNA:   3'- cgaUGCGCG--GGCC-CGCGaa-GGUC-GUC- -5'
29390 3' -60.7 NC_006151.1 + 119967 0.66 0.689175
Target:  5'- cGCgcUGUGCCCGGcGacgaGCUUCCuggcGCGGc -3'
miRNA:   3'- -CGauGCGCGGGCC-Cg---CGAAGGu---CGUC- -5'
29390 3' -60.7 NC_006151.1 + 98042 0.66 0.689175
Target:  5'- cGCaGCGCGagcaccaccagcCCCGGGCGCUcggCCuGgGGc -3'
miRNA:   3'- -CGaUGCGC------------GGGCCCGCGAa--GGuCgUC- -5'
29390 3' -60.7 NC_006151.1 + 115126 0.66 0.689175
Target:  5'- gGCgACGCGCgCGuGCGCcucggCCAGCAc -3'
miRNA:   3'- -CGaUGCGCGgGCcCGCGaa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 130509 0.66 0.689175
Target:  5'- cGCcGCGCGUCuCGGGCGCg---GGCGu -3'
miRNA:   3'- -CGaUGCGCGG-GCCCGCGaaggUCGUc -5'
29390 3' -60.7 NC_006151.1 + 138157 0.66 0.689175
Target:  5'- gGC-GCGCGCUCGaGGC-CUUCgUGGCGGa -3'
miRNA:   3'- -CGaUGCGCGGGC-CCGcGAAG-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 122791 0.66 0.688189
Target:  5'- gGCUGCGCggccucGCCCGacgagcgccucgaGGCGCUcaUCCGcGCGu -3'
miRNA:   3'- -CGAUGCG------CGGGC-------------CCGCGA--AGGU-CGUc -5'
29390 3' -60.7 NC_006151.1 + 53519 0.66 0.686216
Target:  5'- cGCcGCGCGCCCcgugagccgcuccaGGGCGCgca-GGCGc -3'
miRNA:   3'- -CGaUGCGCGGG--------------CCCGCGaaggUCGUc -5'
29390 3' -60.7 NC_006151.1 + 8254 0.66 0.679295
Target:  5'- gGCcgGCGCG-CCGGGaCGCcccUCCGGgGGa -3'
miRNA:   3'- -CGa-UGCGCgGGCCC-GCGa--AGGUCgUC- -5'
29390 3' -60.7 NC_006151.1 + 58406 0.66 0.679295
Target:  5'- gGCcaugGCGCGCagCUGGGCGUg--CGGCAGc -3'
miRNA:   3'- -CGa---UGCGCG--GGCCCGCGaagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 74434 0.66 0.679295
Target:  5'- -gUGCGCGCCguugacGCGCagcUCCGGCAGg -3'
miRNA:   3'- cgAUGCGCGGgcc---CGCGa--AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 68990 0.66 0.679295
Target:  5'- aGCaGCGCGCgCaCGcaGGCGUUgcggaagcgcUCCAGCAGc -3'
miRNA:   3'- -CGaUGCGCG-G-GC--CCGCGA----------AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 88136 0.66 0.679295
Target:  5'- cGCUcCGCacguugagcagGCCgGGGUGCU-CCGcGCAGg -3'
miRNA:   3'- -CGAuGCG-----------CGGgCCCGCGAaGGU-CGUC- -5'
29390 3' -60.7 NC_006151.1 + 113408 0.66 0.679295
Target:  5'- uGCUcACGCGCgCGcacuggcuGGCGCUgcgccgcuUCCGGCGc -3'
miRNA:   3'- -CGA-UGCGCGgGC--------CCGCGA--------AGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 130324 0.66 0.679295
Target:  5'- cGCcGCGCGCUCGGGgagcuCGCgcgCC-GCGGc -3'
miRNA:   3'- -CGaUGCGCGGGCCC-----GCGaa-GGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 98784 0.66 0.675332
Target:  5'- cGCUACGUGgcgcagcacacaaCUGGGCGCUgccgCUGGCGu -3'
miRNA:   3'- -CGAUGCGCg------------GGCCCGCGAa---GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 138232 0.66 0.669377
Target:  5'- gGC-GCGCGCacgaguacgCGGGCGCgaccgCgCAGCGGg -3'
miRNA:   3'- -CGaUGCGCGg--------GCCCGCGaa---G-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 62460 0.66 0.669377
Target:  5'- cGCccacCGCGCCCGGG-GCagCCGGUu- -3'
miRNA:   3'- -CGau--GCGCGGGCCCgCGaaGGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 69971 0.66 0.669377
Target:  5'- --gGC-CGCgCGGGCGCUg-CAGCGGc -3'
miRNA:   3'- cgaUGcGCGgGCCCGCGAagGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 11212 0.66 0.669377
Target:  5'- --gGCGCGUCCGGGaagGCUUCUccCGGg -3'
miRNA:   3'- cgaUGCGCGGGCCCg--CGAAGGucGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.