miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 3' -60.7 NC_006151.1 + 141402 0.66 0.669377
Target:  5'- aGCgGCGUGUCCggcgaucggugcGGGCGCggcCCGGCGc -3'
miRNA:   3'- -CGaUGCGCGGG------------CCCGCGaa-GGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 140439 0.68 0.550259
Target:  5'- -gUACGUGCCC-GGCGCcugCCucGGCGGg -3'
miRNA:   3'- cgAUGCGCGGGcCCGCGaa-GG--UCGUC- -5'
29390 3' -60.7 NC_006151.1 + 139605 0.68 0.55808
Target:  5'- aGCggcgGCcCGUCCGGGCGCggcugggggccaUCCGGCGc -3'
miRNA:   3'- -CGa---UGcGCGGGCCCGCGa-----------AGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 138714 0.67 0.629498
Target:  5'- cGCUGCGCGCCgCGcGCGggUCguGUAc -3'
miRNA:   3'- -CGAUGCGCGG-GCcCGCgaAGguCGUc -5'
29390 3' -60.7 NC_006151.1 + 138541 0.66 0.659431
Target:  5'- cGCgUACGCcgGCCUGGGCGCguaCUAcGCGa -3'
miRNA:   3'- -CG-AUGCG--CGGGCCCGCGaa-GGU-CGUc -5'
29390 3' -60.7 NC_006151.1 + 138329 0.68 0.579739
Target:  5'- cCUGCGgGCCCGGcacGCGCgcagcccgCCGGCc- -3'
miRNA:   3'- cGAUGCgCGGGCC---CGCGaa------GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 138232 0.66 0.669377
Target:  5'- gGC-GCGCGCacgaguacgCGGGCGCgaccgCgCAGCGGg -3'
miRNA:   3'- -CGaUGCGCGg--------GCCCGCGaa---G-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 138157 0.66 0.689175
Target:  5'- gGC-GCGCGCUCGaGGC-CUUCgUGGCGGa -3'
miRNA:   3'- -CGaUGCGCGGGC-CCGcGAAG-GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 137867 0.73 0.311801
Target:  5'- -gUACGCGCaCGGGCGCagCCuGCGGc -3'
miRNA:   3'- cgAUGCGCGgGCCCGCGaaGGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 137763 0.72 0.340674
Target:  5'- --cGCG-GCCUGGcGCGCgugcUCCAGCAGg -3'
miRNA:   3'- cgaUGCgCGGGCC-CGCGa---AGGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 133790 0.68 0.56004
Target:  5'- cGCgggggagGCGUGCagcauCCGGGUGCacgUCCGGguGg -3'
miRNA:   3'- -CGa------UGCGCG-----GGCCCGCGa--AGGUCguC- -5'
29390 3' -60.7 NC_006151.1 + 132855 0.67 0.649464
Target:  5'- gGCggcCG-GCCCGGGgcCGCgccccCCAGCAGg -3'
miRNA:   3'- -CGau-GCgCGGGCCC--GCGaa---GGUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 132807 0.71 0.412459
Target:  5'- cGCUgguacaGCGCGUCCGGGCugGCcgCCcGCGGg -3'
miRNA:   3'- -CGA------UGCGCGGGCCCG--CGaaGGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 132166 0.73 0.318842
Target:  5'- aGCUGCGCGgCCGgcaccGGCGCgcccgaCAGCAGc -3'
miRNA:   3'- -CGAUGCGCgGGC-----CCGCGaag---GUCGUC- -5'
29390 3' -60.7 NC_006151.1 + 131734 0.66 0.699011
Target:  5'- gGCggggugGCGgGCCCGGGCGaggcgaCCGucGCGGu -3'
miRNA:   3'- -CGa-----UGCgCGGGCCCGCgaa---GGU--CGUC- -5'
29390 3' -60.7 NC_006151.1 + 130509 0.66 0.689175
Target:  5'- cGCcGCGCGUCuCGGGCGCg---GGCGu -3'
miRNA:   3'- -CGaUGCGCGG-GCCCGCGaaggUCGUc -5'
29390 3' -60.7 NC_006151.1 + 130369 0.7 0.447225
Target:  5'- gGCcGCGCGCgCCGcGGCGU--CCAGCGc -3'
miRNA:   3'- -CGaUGCGCG-GGC-CCGCGaaGGUCGUc -5'
29390 3' -60.7 NC_006151.1 + 130324 0.66 0.679295
Target:  5'- cGCcGCGCGCUCGGGgagcuCGCgcgCC-GCGGc -3'
miRNA:   3'- -CGaUGCGCGGGCCC-----GCGaa-GGuCGUC- -5'
29390 3' -60.7 NC_006151.1 + 130266 0.67 0.639484
Target:  5'- gGCcgGCGCgcggccccgagGCCgCGGGCGCgcgCCGGCc- -3'
miRNA:   3'- -CGa-UGCG-----------CGG-GCCCGCGaa-GGUCGuc -5'
29390 3' -60.7 NC_006151.1 + 130097 0.7 0.426166
Target:  5'- aGCUcGCGCuccucggccgugaaGCCCggguucuggccguGGGCGCgcgCCAGCAGg -3'
miRNA:   3'- -CGA-UGCG--------------CGGG-------------CCCGCGaa-GGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.