miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 50507 0.71 0.376107
Target:  5'- cUACGCCaccgUCGUCCAGCCUaCCCAcCAc -3'
miRNA:   3'- cGUGCGGa---AGCGGGUCGGG-GGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 18588 0.71 0.376107
Target:  5'- aGCACGCaga-GCCagaCGGcCCCCCCGACGa -3'
miRNA:   3'- -CGUGCGgaagCGG---GUC-GGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 54963 0.71 0.384165
Target:  5'- cGCGCGCCUcUG-CCAGCUgCUCAACAc -3'
miRNA:   3'- -CGUGCGGAaGCgGGUCGGgGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 50389 0.71 0.384165
Target:  5'- cGCGgGCCccgcgguccUCGCgCGGcCCCCCCGACGa -3'
miRNA:   3'- -CGUgCGGa--------AGCGgGUC-GGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 59324 0.71 0.384165
Target:  5'- cCGCGCCccCGCCCG--CCCCCAGCGc -3'
miRNA:   3'- cGUGCGGaaGCGGGUcgGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 81347 0.71 0.384165
Target:  5'- cGC-CGCCgccgCGCCCGGggCCCCGGCGg -3'
miRNA:   3'- -CGuGCGGaa--GCGGGUCggGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 132855 0.71 0.391515
Target:  5'- gGCG-GCCg--GCCCGgggccgcGCCCCCCAGCAg -3'
miRNA:   3'- -CGUgCGGaagCGGGU-------CGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 136886 0.71 0.392337
Target:  5'- -aGCGCCUcgCGCCCcacGGCugggugcgcgCCCCCGACGa -3'
miRNA:   3'- cgUGCGGAa-GCGGG---UCG----------GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 64324 0.71 0.398124
Target:  5'- uGCugGCCUcgcaccacgUCggcgggaagcgcggGCCguCGGCCCCCCAGCGc -3'
miRNA:   3'- -CGugCGGA---------AG--------------CGG--GUCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 124481 0.71 0.400621
Target:  5'- uCGCGCCUgaacgCGCUCGGCaCCCgCGGCu -3'
miRNA:   3'- cGUGCGGAa----GCGGGUCG-GGGgGUUGu -5'
29392 3' -60.7 NC_006151.1 + 78950 0.71 0.408171
Target:  5'- cGCGCGCC--CGCCCGccucggucucgguGCCCCCCc--- -3'
miRNA:   3'- -CGUGCGGaaGCGGGU-------------CGGGGGGuugu -5'
29392 3' -60.7 NC_006151.1 + 133331 0.71 0.409016
Target:  5'- gGCGCGCCgggCGgCCGGUUCCgCGGCGg -3'
miRNA:   3'- -CGUGCGGaa-GCgGGUCGGGGgGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 49265 0.71 0.414957
Target:  5'- uGCGCGCCgUCGUCCAGCggcucugcgagaccCgCCCCAAg- -3'
miRNA:   3'- -CGUGCGGaAGCGGGUCG--------------G-GGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 102944 0.71 0.417519
Target:  5'- cGCGCGCUggacgcggCGCCC-GCCgCCCaCGACGg -3'
miRNA:   3'- -CGUGCGGaa------GCGGGuCGG-GGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 27618 0.71 0.417519
Target:  5'- cGgAC-CCga-GCCCGGCCgCCCCGACGg -3'
miRNA:   3'- -CgUGcGGaagCGGGUCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 102142 0.71 0.420951
Target:  5'- gGCGCGCCgggcugcuggagcgcUUCGCCgAGCUCCUCuuCGg -3'
miRNA:   3'- -CGUGCGG---------------AAGCGGgUCGGGGGGuuGU- -5'
29392 3' -60.7 NC_006151.1 + 77217 0.7 0.42613
Target:  5'- cGCGcCGCCgcgugugugCGCCgGgaggcGCCCCCCGGCGg -3'
miRNA:   3'- -CGU-GCGGaa-------GCGGgU-----CGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 50705 0.7 0.42613
Target:  5'- cCACGCCUcgGCgaCGGCCgCCCCGGCGg -3'
miRNA:   3'- cGUGCGGAagCGg-GUCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 94715 0.7 0.434845
Target:  5'- cGCGCGCUccagccgCGCCaCGGCgUCCCGGCGc -3'
miRNA:   3'- -CGUGCGGaa-----GCGG-GUCGgGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 50341 0.7 0.434845
Target:  5'- -gGCGCCUg-GCCgCGGCCUCCCGccGCGu -3'
miRNA:   3'- cgUGCGGAagCGG-GUCGGGGGGU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.