miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 139605 0.66 0.644015
Target:  5'- aGCgGcGGCCCGu-CCGGGCgCGGCUGgGg -3'
miRNA:   3'- -CGaC-CUGGGCcuGGCCCG-GUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 4903 0.66 0.644015
Target:  5'- --cGGAgCCGGGCCaGGGCUccCCgaGCGg -3'
miRNA:   3'- cgaCCUgGGCCUGG-CCCGGuuGG--CGC- -5'
29393 5' -62.8 NC_006151.1 + 100699 0.66 0.644015
Target:  5'- cGC-GaGACCUGGACCGaGGCgCGcgaggagcaggcGCCGCc -3'
miRNA:   3'- -CGaC-CUGGGCCUGGC-CCG-GU------------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 130274 0.66 0.644015
Target:  5'- cGC-GGcCCCGaGGCCGcgggcgcgcgccGGCCGACgGCGc -3'
miRNA:   3'- -CGaCCuGGGC-CUGGC------------CCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 14250 0.66 0.644015
Target:  5'- uGCgggGGAuccCCCGGuCgGGGUgGGCCGgGa -3'
miRNA:   3'- -CGa--CCU---GGGCCuGgCCCGgUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 51181 0.66 0.628468
Target:  5'- uGCaGGGCCCGcuccacgacgaggguGGCCagcaGGCCGcCCGCGg -3'
miRNA:   3'- -CGaCCUGGGC---------------CUGGc---CCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 79197 0.66 0.625553
Target:  5'- aGCUGGucaugagaggggauuCCCGGucGCUcGGCCccAGCCGCGc -3'
miRNA:   3'- -CGACCu--------------GGGCC--UGGcCCGG--UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20158 0.66 0.605167
Target:  5'- cGCgUGGACCgcCGGGCCGcGCCcgggUCGCGg -3'
miRNA:   3'- -CG-ACCUGG--GCCUGGCcCGGuu--GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3897 0.66 0.605167
Target:  5'- cGCUGGGacgacgaggCCGGGCugcuCGGGCCAGa-GCGg -3'
miRNA:   3'- -CGACCUg--------GGCCUG----GCCCGGUUggCGC- -5'
29393 5' -62.8 NC_006151.1 + 133165 0.66 0.605167
Target:  5'- cGC-GGGCgUGGGCCucGGCCAcgcgucccacgGCCGCGc -3'
miRNA:   3'- -CGaCCUGgGCCUGGc-CCGGU-----------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 124976 0.66 0.614868
Target:  5'- aGCUGGACCUGcagcgcgugcACCuGGgCGACUGCGu -3'
miRNA:   3'- -CGACCUGGGCc---------UGGcCCgGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 52374 0.66 0.614868
Target:  5'- cGCgcccccgGGGCCCgcggGGGCggCGGGCgCcGCCGCGc -3'
miRNA:   3'- -CGa------CCUGGG----CCUG--GCCCG-GuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 54605 0.66 0.614868
Target:  5'- gGCgUGGuCCCGGugcGCCGGGCgcGCCcCGg -3'
miRNA:   3'- -CG-ACCuGGGCC---UGGCCCGguUGGcGC- -5'
29393 5' -62.8 NC_006151.1 + 57384 0.66 0.614868
Target:  5'- gGCgUGG-Ca-GGACCaGGCCAggGCCGCGu -3'
miRNA:   3'- -CG-ACCuGggCCUGGcCCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 102269 0.66 0.614868
Target:  5'- cCUGGGCgcgcugCCGGAgCGcGGCCcGGCCGgGg -3'
miRNA:   3'- cGACCUG------GGCCUgGC-CCGG-UUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 28833 0.66 0.623609
Target:  5'- uGC-GGGCCCcggGGACgCGGGCCcggcucccccauuGGCCgGCGc -3'
miRNA:   3'- -CGaCCUGGG---CCUG-GCCCGG-------------UUGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 106775 0.66 0.624581
Target:  5'- cGCgUGaGcGCCUGGACCuGGCCGcgGCgGCGg -3'
miRNA:   3'- -CG-AC-C-UGGGCCUGGcCCGGU--UGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 109740 0.66 0.624581
Target:  5'- cGCUGGAgC-GGauGCCGuGGCC-GCCGCc -3'
miRNA:   3'- -CGACCUgGgCC--UGGC-CCGGuUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 37134 0.66 0.624581
Target:  5'- --cGGcgccccacucGCCCGcGCCGGGCCGccACCGUc -3'
miRNA:   3'- cgaCC----------UGGGCcUGGCCCGGU--UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 74880 0.66 0.624581
Target:  5'- cGC-GGcCaCCGuGGCCgGGGCCAGCCGa- -3'
miRNA:   3'- -CGaCCuG-GGC-CUGG-CCCGGUUGGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.