miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 121575 0.95 0.006957
Target:  5'- aCGGGCGCGGGUGCCCGGCUGUauCAAu -3'
miRNA:   3'- -GCCCGCGCCCACGGGCCGACAauGUU- -5'
29395 3' -61.6 NC_006151.1 + 119962 0.75 0.183826
Target:  5'- uCGGGCGCGcuGUGCCCGGCg---ACGAg -3'
miRNA:   3'- -GCCCGCGCc-CACGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 78669 0.73 0.253522
Target:  5'- gGGGCGCGGGUGCuggacgggcucuacgCCGGCcGggGCc- -3'
miRNA:   3'- gCCCGCGCCCACG---------------GGCCGaCaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 94660 0.73 0.269336
Target:  5'- -uGGCcaGCGGGUGCCCGGCgg--GCAGc -3'
miRNA:   3'- gcCCG--CGCCCACGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 9695 0.73 0.275627
Target:  5'- cCGGcCGCGGGUGCCCGGgaG--ACGGg -3'
miRNA:   3'- -GCCcGCGCCCACGGGCCgaCaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 3134 0.72 0.301965
Target:  5'- cCGGGCGCGGGgcGCCCucggcgGGCUcGgcGCAGa -3'
miRNA:   3'- -GCCCGCGCCCa-CGGG------CCGA-CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 101288 0.72 0.308846
Target:  5'- aGGGCGCGGGcgGCgCCGcGCUGcacUGCGu -3'
miRNA:   3'- gCCCGCGCCCa-CG-GGC-CGACa--AUGUu -5'
29395 3' -61.6 NC_006151.1 + 55982 0.72 0.308846
Target:  5'- aGGuGCGCGaGGUGCCCgGGCUGa----- -3'
miRNA:   3'- gCC-CGCGC-CCACGGG-CCGACaauguu -5'
29395 3' -61.6 NC_006151.1 + 75413 0.7 0.376107
Target:  5'- gCGGGUcCGGGagGCCCGGCgugGgcGCGAa -3'
miRNA:   3'- -GCCCGcGCCCa-CGGGCCGa--CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 102508 0.69 0.417519
Target:  5'- cCGcGGCGCGGGacCCCGGCggcGUcUACGAc -3'
miRNA:   3'- -GC-CCGCGCCCacGGGCCGa--CA-AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 4049 0.69 0.434845
Target:  5'- gCGGGCGCGGGc-CCCGuccacGCUGUaGCGc -3'
miRNA:   3'- -GCCCGCGCCCacGGGC-----CGACAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 3454 0.69 0.443662
Target:  5'- uCGGGCGCgGGGUGCUCGGgcaUGggccCGAg -3'
miRNA:   3'- -GCCCGCG-CCCACGGGCCg--ACaau-GUU- -5'
29395 3' -61.6 NC_006151.1 + 18691 0.69 0.452579
Target:  5'- aCGGGCGCGcGGgcgGCgCCGGCgucGUgACGc -3'
miRNA:   3'- -GCCCGCGC-CCa--CG-GGCCGa--CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 17108 0.69 0.452579
Target:  5'- gGGGCGcCGGGgGCuCCGGCggcgGUgcUGCGGg -3'
miRNA:   3'- gCCCGC-GCCCaCG-GGCCGa---CA--AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 14063 0.69 0.461593
Target:  5'- gGGGUGCGuGGcgGCCCGGCcGacgGCAc -3'
miRNA:   3'- gCCCGCGC-CCa-CGGGCCGaCaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 73056 0.68 0.470701
Target:  5'- gGGuGCGCGGGguccGCgUGGCUGUgguCGAa -3'
miRNA:   3'- gCC-CGCGCCCa---CGgGCCGACAau-GUU- -5'
29395 3' -61.6 NC_006151.1 + 141392 0.68 0.479899
Target:  5'- cCGGGCaaacaGCGGcGUGUCCGGCgaucggUGCGGg -3'
miRNA:   3'- -GCCCG-----CGCC-CACGGGCCGaca---AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 40084 0.68 0.479899
Target:  5'- uCGGGCGcCGGGgccgGCCCcGGCgaggACGGg -3'
miRNA:   3'- -GCCCGC-GCCCa---CGGG-CCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 27547 0.68 0.479899
Target:  5'- gGGGgGgGGGgggGCUgGGCUGggACGGg -3'
miRNA:   3'- gCCCgCgCCCa--CGGgCCGACaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 62504 0.68 0.517523
Target:  5'- -aGGCGCGGacgacgGCCCGGCgGUaccUGCAGa -3'
miRNA:   3'- gcCCGCGCCca----CGGGCCGaCA---AUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.