miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 2624 0.66 0.635751
Target:  5'- gGGGUcCGGG-GCCCGGCgcgGgUGCu- -3'
miRNA:   3'- gCCCGcGCCCaCGGGCCGa--CaAUGuu -5'
29395 3' -61.6 NC_006151.1 + 3134 0.72 0.301965
Target:  5'- cCGGGCGCGGGgcGCCCucggcgGGCUcGgcGCAGa -3'
miRNA:   3'- -GCCCGCGCCCa-CGGG------CCGA-CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 3454 0.69 0.443662
Target:  5'- uCGGGCGCgGGGUGCUCGGgcaUGggccCGAg -3'
miRNA:   3'- -GCCCGCG-CCCACGGGCCg--ACaau-GUU- -5'
29395 3' -61.6 NC_006151.1 + 3943 0.67 0.536775
Target:  5'- cCGGGCGCGGGcuccgcggGCCCgGGCcGcgcgGCGg -3'
miRNA:   3'- -GCCCGCGCCCa-------CGGG-CCGaCaa--UGUu -5'
29395 3' -61.6 NC_006151.1 + 4049 0.69 0.434845
Target:  5'- gCGGGCGCGGGc-CCCGuccacGCUGUaGCGc -3'
miRNA:   3'- -GCCCGCGCCCacGGGC-----CGACAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 4233 0.67 0.575963
Target:  5'- gCGGGCGCGGGcaGCCgGaGCgg--GCAGg -3'
miRNA:   3'- -GCCCGCGCCCa-CGGgC-CGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 4615 0.67 0.575963
Target:  5'- gGGGCGCGuGGa-CCCGGCgcugGCAGa -3'
miRNA:   3'- gCCCGCGC-CCacGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 4779 0.66 0.635751
Target:  5'- aCGGGCaCGGGcccgGCCgCGGCgcgGUaGCGGg -3'
miRNA:   3'- -GCCCGcGCCCa---CGG-GCCGa--CAaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 5079 0.66 0.595809
Target:  5'- aGGGcCGCGGG-GCCgCGGCgg--GCGc -3'
miRNA:   3'- gCCC-GCGCCCaCGG-GCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 8122 0.66 0.635751
Target:  5'- uCGGaGCGCGGaccccGCCCGGUgggGggGCGGg -3'
miRNA:   3'- -GCC-CGCGCCca---CGGGCCGa--CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 9695 0.73 0.275627
Target:  5'- cCGGcCGCGGGUGCCCGGgaG--ACGGg -3'
miRNA:   3'- -GCCcGCGCCCACGGGCCgaCaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 13027 0.66 0.605773
Target:  5'- gGGGCGCGGccGaCCCGGCgGUgACc- -3'
miRNA:   3'- gCCCGCGCCcaC-GGGCCGaCAaUGuu -5'
29395 3' -61.6 NC_006151.1 + 14063 0.69 0.461593
Target:  5'- gGGGUGCGuGGcgGCCCGGCcGacgGCAc -3'
miRNA:   3'- gCCCGCGC-CCa-CGGGCCGaCaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 15048 0.67 0.575963
Target:  5'- aCGGcGCGCGGG-GcCCCGGCgccuucUGCGc -3'
miRNA:   3'- -GCC-CGCGCCCaC-GGGCCGaca---AUGUu -5'
29395 3' -61.6 NC_006151.1 + 17016 0.68 0.527116
Target:  5'- -uGGCGCGGGUGgccgggauCCCGGCg---ACGAu -3'
miRNA:   3'- gcCCGCGCCCAC--------GGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 17108 0.69 0.452579
Target:  5'- gGGGCGcCGGGgGCuCCGGCggcgGUgcUGCGGg -3'
miRNA:   3'- gCCCGC-GCCCaCG-GGCCGa---CA--AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 18691 0.69 0.452579
Target:  5'- aCGGGCGCGcGGgcgGCgCCGGCgucGUgACGc -3'
miRNA:   3'- -GCCCGCGC-CCa--CG-GGCCGa--CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 21334 0.67 0.58587
Target:  5'- gCGcGGCGgGGGU-CCgCGGCUGgaACGg -3'
miRNA:   3'- -GC-CCGCgCCCAcGG-GCCGACaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 27547 0.68 0.479899
Target:  5'- gGGGgGgGGGgggGCUgGGCUGggACGGg -3'
miRNA:   3'- gCCCgCgCCCa--CGGgCCGACaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 40084 0.68 0.479899
Target:  5'- uCGGGCGcCGGGgccgGCCCcGGCgaggACGGg -3'
miRNA:   3'- -GCCCGC-GCCCa---CGGG-CCGacaaUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.