miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 46726 0.66 0.645748
Target:  5'- gGGGC-CGGGgccgGCCCGGg-GUcgGCGAa -3'
miRNA:   3'- gCCCGcGCCCa---CGGGCCgaCAa-UGUU- -5'
29395 3' -61.6 NC_006151.1 + 52679 0.68 0.526154
Target:  5'- uGaGGCGCGuGGUGacggccaCCUGGCUGUUgaGCAc -3'
miRNA:   3'- gC-CCGCGC-CCAC-------GGGCCGACAA--UGUu -5'
29395 3' -61.6 NC_006151.1 + 55982 0.72 0.308846
Target:  5'- aGGuGCGCGaGGUGCCCgGGCUGa----- -3'
miRNA:   3'- gCC-CGCGC-CCACGGG-CCGACaauguu -5'
29395 3' -61.6 NC_006151.1 + 57841 0.67 0.536775
Target:  5'- aGGGCGCacGGGUGCUccaCGGCgcugGUcGCGc -3'
miRNA:   3'- gCCCGCG--CCCACGG---GCCGa---CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 62108 0.67 0.575963
Target:  5'- uGGGCGCGGccgugGUCgGGCUGaUGCu- -3'
miRNA:   3'- gCCCGCGCCca---CGGgCCGACaAUGuu -5'
29395 3' -61.6 NC_006151.1 + 62504 0.68 0.517523
Target:  5'- -aGGCGCGGacgacgGCCCGGCgGUaccUGCAGa -3'
miRNA:   3'- gcCCGCGCCca----CGGGCCGaCA---AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 64217 0.67 0.536775
Target:  5'- -cGGCGUGGGcGCCuCGGCg--UACAGg -3'
miRNA:   3'- gcCCGCGCCCaCGG-GCCGacaAUGUU- -5'
29395 3' -61.6 NC_006151.1 + 65698 0.66 0.623752
Target:  5'- cCGGGCGCGGGaucagguaggggGCCucgcgCGGCUGcgcGCGg -3'
miRNA:   3'- -GCCCGCGCCCa-----------CGG-----GCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 73056 0.68 0.470701
Target:  5'- gGGuGCGCGGGguccGCgUGGCUGUgguCGAa -3'
miRNA:   3'- gCC-CGCGCCCa---CGgGCCGACAau-GUU- -5'
29395 3' -61.6 NC_006151.1 + 73254 0.67 0.556269
Target:  5'- aCGGGCaCGGGcGCCaGGCgGUUGCc- -3'
miRNA:   3'- -GCCCGcGCCCaCGGgCCGaCAAUGuu -5'
29395 3' -61.6 NC_006151.1 + 74318 0.66 0.615756
Target:  5'- uCGuGGUGCGGGUGCaggGGCUGg----- -3'
miRNA:   3'- -GC-CCGCGCCCACGgg-CCGACaauguu -5'
29395 3' -61.6 NC_006151.1 + 75413 0.7 0.376107
Target:  5'- gCGGGUcCGGGagGCCCGGCgugGgcGCGAa -3'
miRNA:   3'- -GCCCGcGCCCa-CGGGCCGa--CaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 78669 0.73 0.253522
Target:  5'- gGGGCGCGGGUGCuggacgggcucuacgCCGGCcGggGCc- -3'
miRNA:   3'- gCCCGCGCCCACG---------------GGCCGaCaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 80043 0.66 0.645748
Target:  5'- gGGGagGCGGGaGUCUGGCUGUg---- -3'
miRNA:   3'- gCCCg-CGCCCaCGGGCCGACAauguu -5'
29395 3' -61.6 NC_006151.1 + 89950 0.67 0.55431
Target:  5'- gCGGGCGCGGccaggaaccggGCgCGGCUGgcgACGu -3'
miRNA:   3'- -GCCCGCGCCca---------CGgGCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 94660 0.73 0.269336
Target:  5'- -uGGCcaGCGGGUGCCCGGCgg--GCAGc -3'
miRNA:   3'- gcCCG--CGCCCACGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 96601 0.67 0.574974
Target:  5'- cCGGGCGCGGGcgcgccgacgucgUGCCCgagGGCgc--GCAGc -3'
miRNA:   3'- -GCCCGCGCCC-------------ACGGG---CCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 101216 0.66 0.615756
Target:  5'- aGGGCcaggcgugGaCGGG-GCCCGGCgGggGCAu -3'
miRNA:   3'- gCCCG--------C-GCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 101288 0.72 0.308846
Target:  5'- aGGGCGCGGGcgGCgCCGcGCUGcacUGCGu -3'
miRNA:   3'- gCCCGCGCCCa-CG-GGC-CGACa--AUGUu -5'
29395 3' -61.6 NC_006151.1 + 102508 0.69 0.417519
Target:  5'- cCGcGGCGCGGGacCCCGGCggcGUcUACGAc -3'
miRNA:   3'- -GC-CCGCGCCCacGGGCCGa--CA-AUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.