miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 52679 0.68 0.526154
Target:  5'- uGaGGCGCGuGGUGacggccaCCUGGCUGUUgaGCAc -3'
miRNA:   3'- gC-CCGCGC-CCAC-------GGGCCGACAA--UGUu -5'
29395 3' -61.6 NC_006151.1 + 17016 0.68 0.527116
Target:  5'- -uGGCGCGGGUGgccgggauCCCGGCg---ACGAu -3'
miRNA:   3'- gcCCGCGCCCAC--------GGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 102682 0.68 0.527116
Target:  5'- cCGuGGaCGCGGGggcGCCCGGCgcggGCGg -3'
miRNA:   3'- -GC-CC-GCGCCCa--CGGGCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 64217 0.67 0.536775
Target:  5'- -cGGCGUGGGcGCCuCGGCg--UACAGg -3'
miRNA:   3'- gcCCGCGCCCaCGG-GCCGacaAUGUU- -5'
29395 3' -61.6 NC_006151.1 + 135091 0.67 0.536775
Target:  5'- gGGGCgGCGGG-GCCgGGCgGgcgGCGGu -3'
miRNA:   3'- gCCCG-CGCCCaCGGgCCGaCaa-UGUU- -5'
29395 3' -61.6 NC_006151.1 + 57841 0.67 0.536775
Target:  5'- aGGGCGCacGGGUGCUccaCGGCgcugGUcGCGc -3'
miRNA:   3'- gCCCGCG--CCCACGG---GCCGa---CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 3943 0.67 0.536775
Target:  5'- cCGGGCGCGGGcuccgcggGCCCgGGCcGcgcgGCGg -3'
miRNA:   3'- -GCCCGCGCCCa-------CGGG-CCGaCaa--UGUu -5'
29395 3' -61.6 NC_006151.1 + 89950 0.67 0.55431
Target:  5'- gCGGGCGCGGccaggaaccggGCgCGGCUGgcgACGu -3'
miRNA:   3'- -GCCCGCGCCca---------CGgGCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 73254 0.67 0.556269
Target:  5'- aCGGGCaCGGGcGCCaGGCgGUUGCc- -3'
miRNA:   3'- -GCCCGcGCCCaCGGgCCGaCAAUGuu -5'
29395 3' -61.6 NC_006151.1 + 135162 0.67 0.556269
Target:  5'- gCGGGCGCGGcccggacggGCgCCGGCUGccGCc- -3'
miRNA:   3'- -GCCCGCGCCca-------CG-GGCCGACaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 117786 0.67 0.566094
Target:  5'- cCGGGCG-GGGcgccacGCCCGGC-GggGCGGg -3'
miRNA:   3'- -GCCCGCgCCCa-----CGGGCCGaCaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 96601 0.67 0.574974
Target:  5'- cCGGGCGCGGGcgcgccgacgucgUGCCCgagGGCgc--GCAGc -3'
miRNA:   3'- -GCCCGCGCCC-------------ACGGG---CCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 4615 0.67 0.575963
Target:  5'- gGGGCGCGuGGa-CCCGGCgcugGCAGa -3'
miRNA:   3'- gCCCGCGC-CCacGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 62108 0.67 0.575963
Target:  5'- uGGGCGCGGccgugGUCgGGCUGaUGCu- -3'
miRNA:   3'- gCCCGCGCCca---CGGgCCGACaAUGuu -5'
29395 3' -61.6 NC_006151.1 + 15048 0.67 0.575963
Target:  5'- aCGGcGCGCGGG-GcCCCGGCgccuucUGCGc -3'
miRNA:   3'- -GCC-CGCGCCCaC-GGGCCGaca---AUGUu -5'
29395 3' -61.6 NC_006151.1 + 4233 0.67 0.575963
Target:  5'- gCGGGCGCGGGcaGCCgGaGCgg--GCAGg -3'
miRNA:   3'- -GCCCGCGCCCa-CGGgC-CGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 21334 0.67 0.58587
Target:  5'- gCGcGGCGgGGGU-CCgCGGCUGgaACGg -3'
miRNA:   3'- -GC-CCGCgCCCAcGG-GCCGACaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 5079 0.66 0.595809
Target:  5'- aGGGcCGCGGG-GCCgCGGCgg--GCGc -3'
miRNA:   3'- gCCC-GCGCCCaCGG-GCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 131105 0.66 0.595809
Target:  5'- -cGGCGgGGG-GCCCGGCcGcgGCGc -3'
miRNA:   3'- gcCCGCgCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 13027 0.66 0.605773
Target:  5'- gGGGCGCGGccGaCCCGGCgGUgACc- -3'
miRNA:   3'- gCCCGCGCCcaC-GGGCCGaCAaUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.