miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 117786 0.67 0.566094
Target:  5'- cCGGGCG-GGGcgccacGCCCGGC-GggGCGGg -3'
miRNA:   3'- -GCCCGCgCCCa-----CGGGCCGaCaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 135162 0.67 0.556269
Target:  5'- gCGGGCGCGGcccggacggGCgCCGGCUGccGCc- -3'
miRNA:   3'- -GCCCGCGCCca-------CG-GGCCGACaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 73254 0.67 0.556269
Target:  5'- aCGGGCaCGGGcGCCaGGCgGUUGCc- -3'
miRNA:   3'- -GCCCGcGCCCaCGGgCCGaCAAUGuu -5'
29395 3' -61.6 NC_006151.1 + 89950 0.67 0.55431
Target:  5'- gCGGGCGCGGccaggaaccggGCgCGGCUGgcgACGu -3'
miRNA:   3'- -GCCCGCGCCca---------CGgGCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 57841 0.67 0.536775
Target:  5'- aGGGCGCacGGGUGCUccaCGGCgcugGUcGCGc -3'
miRNA:   3'- gCCCGCG--CCCACGG---GCCGa---CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 135091 0.67 0.536775
Target:  5'- gGGGCgGCGGG-GCCgGGCgGgcgGCGGu -3'
miRNA:   3'- gCCCG-CGCCCaCGGgCCGaCaa-UGUU- -5'
29395 3' -61.6 NC_006151.1 + 3943 0.67 0.536775
Target:  5'- cCGGGCGCGGGcuccgcggGCCCgGGCcGcgcgGCGg -3'
miRNA:   3'- -GCCCGCGCCCa-------CGGG-CCGaCaa--UGUu -5'
29395 3' -61.6 NC_006151.1 + 64217 0.67 0.536775
Target:  5'- -cGGCGUGGGcGCCuCGGCg--UACAGg -3'
miRNA:   3'- gcCCGCGCCCaCGG-GCCGacaAUGUU- -5'
29395 3' -61.6 NC_006151.1 + 102682 0.68 0.527116
Target:  5'- cCGuGGaCGCGGGggcGCCCGGCgcggGCGg -3'
miRNA:   3'- -GC-CC-GCGCCCa--CGGGCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 17016 0.68 0.527116
Target:  5'- -uGGCGCGGGUGgccgggauCCCGGCg---ACGAu -3'
miRNA:   3'- gcCCGCGCCCAC--------GGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 52679 0.68 0.526154
Target:  5'- uGaGGCGCGuGGUGacggccaCCUGGCUGUUgaGCAc -3'
miRNA:   3'- gC-CCGCGC-CCAC-------GGGCCGACAA--UGUu -5'
29395 3' -61.6 NC_006151.1 + 62504 0.68 0.517523
Target:  5'- -aGGCGCGGacgacgGCCCGGCgGUaccUGCAGa -3'
miRNA:   3'- gcCCGCGCCca----CGGGCCGaCA---AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 141392 0.68 0.479899
Target:  5'- cCGGGCaaacaGCGGcGUGUCCGGCgaucggUGCGGg -3'
miRNA:   3'- -GCCCG-----CGCC-CACGGGCCGaca---AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 40084 0.68 0.479899
Target:  5'- uCGGGCGcCGGGgccgGCCCcGGCgaggACGGg -3'
miRNA:   3'- -GCCCGC-GCCCa---CGGG-CCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 27547 0.68 0.479899
Target:  5'- gGGGgGgGGGgggGCUgGGCUGggACGGg -3'
miRNA:   3'- gCCCgCgCCCa--CGGgCCGACaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 73056 0.68 0.470701
Target:  5'- gGGuGCGCGGGguccGCgUGGCUGUgguCGAa -3'
miRNA:   3'- gCC-CGCGCCCa---CGgGCCGACAau-GUU- -5'
29395 3' -61.6 NC_006151.1 + 14063 0.69 0.461593
Target:  5'- gGGGUGCGuGGcgGCCCGGCcGacgGCAc -3'
miRNA:   3'- gCCCGCGC-CCa-CGGGCCGaCaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 18691 0.69 0.452579
Target:  5'- aCGGGCGCGcGGgcgGCgCCGGCgucGUgACGc -3'
miRNA:   3'- -GCCCGCGC-CCa--CG-GGCCGa--CAaUGUu -5'
29395 3' -61.6 NC_006151.1 + 17108 0.69 0.452579
Target:  5'- gGGGCGcCGGGgGCuCCGGCggcgGUgcUGCGGg -3'
miRNA:   3'- gCCCGC-GCCCaCG-GGCCGa---CA--AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 3454 0.69 0.443662
Target:  5'- uCGGGCGCgGGGUGCUCGGgcaUGggccCGAg -3'
miRNA:   3'- -GCCCGCG-CCCACGGGCCg--ACaau-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.