miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 3' -61.6 NC_006151.1 + 141748 0.66 0.605773
Target:  5'- gGGGCGCGGGgcgcgcGcCCCGGUg---GCGu -3'
miRNA:   3'- gCCCGCGCCCa-----C-GGGCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 141392 0.68 0.479899
Target:  5'- cCGGGCaaacaGCGGcGUGUCCGGCgaucggUGCGGg -3'
miRNA:   3'- -GCCCG-----CGCC-CACGGGCCGaca---AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 135162 0.67 0.556269
Target:  5'- gCGGGCGCGGcccggacggGCgCCGGCUGccGCc- -3'
miRNA:   3'- -GCCCGCGCCca-------CG-GGCCGACaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 135091 0.67 0.536775
Target:  5'- gGGGCgGCGGG-GCCgGGCgGgcgGCGGu -3'
miRNA:   3'- gCCCG-CGCCCaCGGgCCGaCaa-UGUU- -5'
29395 3' -61.6 NC_006151.1 + 131105 0.66 0.595809
Target:  5'- -cGGCGgGGG-GCCCGGCcGcgGCGc -3'
miRNA:   3'- gcCCGCgCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 130961 0.66 0.605773
Target:  5'- gCGGGCGCGGG-GgCCGGUa------- -3'
miRNA:   3'- -GCCCGCGCCCaCgGGCCGacaauguu -5'
29395 3' -61.6 NC_006151.1 + 121575 0.95 0.006957
Target:  5'- aCGGGCGCGGGUGCCCGGCUGUauCAAu -3'
miRNA:   3'- -GCCCGCGCCCACGGGCCGACAauGUU- -5'
29395 3' -61.6 NC_006151.1 + 119962 0.75 0.183826
Target:  5'- uCGGGCGCGcuGUGCCCGGCg---ACGAg -3'
miRNA:   3'- -GCCCGCGCc-CACGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 117786 0.67 0.566094
Target:  5'- cCGGGCG-GGGcgccacGCCCGGC-GggGCGGg -3'
miRNA:   3'- -GCCCGCgCCCa-----CGGGCCGaCaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 111280 0.66 0.605773
Target:  5'- gCGGGCGgGGGguacgcgGCCUGGCcc--ACGAa -3'
miRNA:   3'- -GCCCGCgCCCa------CGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 102682 0.68 0.527116
Target:  5'- cCGuGGaCGCGGGggcGCCCGGCgcggGCGg -3'
miRNA:   3'- -GC-CC-GCGCCCa--CGGGCCGacaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 102508 0.69 0.417519
Target:  5'- cCGcGGCGCGGGacCCCGGCggcGUcUACGAc -3'
miRNA:   3'- -GC-CCGCGCCCacGGGCCGa--CA-AUGUU- -5'
29395 3' -61.6 NC_006151.1 + 101288 0.72 0.308846
Target:  5'- aGGGCGCGGGcgGCgCCGcGCUGcacUGCGu -3'
miRNA:   3'- gCCCGCGCCCa-CG-GGC-CGACa--AUGUu -5'
29395 3' -61.6 NC_006151.1 + 101216 0.66 0.615756
Target:  5'- aGGGCcaggcgugGaCGGG-GCCCGGCgGggGCAu -3'
miRNA:   3'- gCCCG--------C-GCCCaCGGGCCGaCaaUGUu -5'
29395 3' -61.6 NC_006151.1 + 96601 0.67 0.574974
Target:  5'- cCGGGCGCGGGcgcgccgacgucgUGCCCgagGGCgc--GCAGc -3'
miRNA:   3'- -GCCCGCGCCC-------------ACGGG---CCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 94660 0.73 0.269336
Target:  5'- -uGGCcaGCGGGUGCCCGGCgg--GCAGc -3'
miRNA:   3'- gcCCG--CGCCCACGGGCCGacaaUGUU- -5'
29395 3' -61.6 NC_006151.1 + 89950 0.67 0.55431
Target:  5'- gCGGGCGCGGccaggaaccggGCgCGGCUGgcgACGu -3'
miRNA:   3'- -GCCCGCGCCca---------CGgGCCGACaa-UGUu -5'
29395 3' -61.6 NC_006151.1 + 80043 0.66 0.645748
Target:  5'- gGGGagGCGGGaGUCUGGCUGUg---- -3'
miRNA:   3'- gCCCg-CGCCCaCGGGCCGACAauguu -5'
29395 3' -61.6 NC_006151.1 + 78669 0.73 0.253522
Target:  5'- gGGGCGCGGGUGCuggacgggcucuacgCCGGCcGggGCc- -3'
miRNA:   3'- gCCCGCGCCCACG---------------GGCCGaCaaUGuu -5'
29395 3' -61.6 NC_006151.1 + 75413 0.7 0.376107
Target:  5'- gCGGGUcCGGGagGCCCGGCgugGgcGCGAa -3'
miRNA:   3'- -GCCCGcGCCCa-CGGGCCGa--CaaUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.