miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 62053 0.75 0.651222
Target:  5'- --gUGGCGGuGCACGCGCGCGcCGUCg- -3'
miRNA:   3'- caaACUGUC-UGUGUGUGCGC-GCAGgg -5'
29395 5' -52.3 NC_006151.1 + 136995 0.75 0.661683
Target:  5'- ---cGGCGGGCGCGCGCGCacggcgcuggGCG-CCCu -3'
miRNA:   3'- caaaCUGUCUGUGUGUGCG----------CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 106406 0.74 0.672119
Target:  5'- ---gGGCAGGCGCuguucACGCuGCGCGUCgCCg -3'
miRNA:   3'- caaaCUGUCUGUG-----UGUG-CGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 88446 0.74 0.672119
Target:  5'- ----cACGGAgACGCGCGUGCGgcgCCCg -3'
miRNA:   3'- caaacUGUCUgUGUGUGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 98107 0.74 0.672119
Target:  5'- --cUGGCguauaAGGCGCGCGCGCGCcgagCCCa -3'
miRNA:   3'- caaACUG-----UCUGUGUGUGCGCGca--GGG- -5'
29395 5' -52.3 NC_006151.1 + 106357 0.74 0.682521
Target:  5'- ---gGACacgcuGGACGCGgGCGCGCG-CCCg -3'
miRNA:   3'- caaaCUG-----UCUGUGUgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 58446 0.74 0.703184
Target:  5'- --gUGGCGuGCGCGCGCGCgGCGUCgCg -3'
miRNA:   3'- caaACUGUcUGUGUGUGCG-CGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 80583 0.74 0.692879
Target:  5'- ---cGACGGACgGCGCcCGUGCcGUCCCu -3'
miRNA:   3'- caaaCUGUCUG-UGUGuGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 18497 0.73 0.723596
Target:  5'- ---gGGCAGGCugguguacaccgGCgagaGCAUGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUG------------UG----UGUGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 115125 0.73 0.723596
Target:  5'- ---cGGC-GACGCGCGCGUGCGcCUCg -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 77939 0.73 0.770123
Target:  5'- ---gGGCGGGCGCGCggcccccacgcugaGCGUGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUGUGUG--------------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 113521 0.73 0.740689
Target:  5'- --gUGGCGGACGCGCGCuuccuggcgcugauGCGCGccgcgggCCCg -3'
miRNA:   3'- caaACUGUCUGUGUGUG--------------CGCGCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 19124 0.73 0.733683
Target:  5'- ----cGCGGGgGCGCGCGCGCGUaguaCCa -3'
miRNA:   3'- caaacUGUCUgUGUGUGCGCGCAg---GG- -5'
29395 5' -52.3 NC_006151.1 + 122518 0.73 0.723596
Target:  5'- ---gGACgcgcuccuGGACGCGCACGaCGUGUUCCg -3'
miRNA:   3'- caaaCUG--------UCUGUGUGUGC-GCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 139256 0.72 0.819124
Target:  5'- ---cGACGGcCACGCcCGCGCGcUCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuGCGCGC-AGGg -5'
29395 5' -52.3 NC_006151.1 + 95281 0.72 0.819124
Target:  5'- -gUUGACgaAGACggcgGCgACGCGCGCGgCCCg -3'
miRNA:   3'- caAACUG--UCUG----UG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 141745 0.72 0.819124
Target:  5'- ---gGAgGGGCGCgGgGCGCGCGcCCCg -3'
miRNA:   3'- caaaCUgUCUGUG-UgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 58905 0.72 0.791916
Target:  5'- ---cGGCc-GCGCACACGCGC-UCCCc -3'
miRNA:   3'- caaaCUGucUGUGUGUGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 25408 0.72 0.819124
Target:  5'- ---cGACGGGgGCGCcgccgccccACGCGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUgUGUG---------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 138114 0.72 0.810221
Target:  5'- --cUGGCGGACAUGC-UGCGCGgCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGuGCGCGCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.