miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 138114 0.72 0.810221
Target:  5'- --cUGGCGGACAUGC-UGCGCGgCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGuGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 95445 0.72 0.810221
Target:  5'- ---gGGCGG-CGC-CGCGCGUGUCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 102568 0.72 0.810221
Target:  5'- uGUUUGcGCGcGCcCGCGCGCGCGagUCCCg -3'
miRNA:   3'- -CAAAC-UGUcUGuGUGUGCGCGC--AGGG- -5'
29395 5' -52.3 NC_006151.1 + 95281 0.72 0.819124
Target:  5'- -gUUGACgaAGACggcgGCgACGCGCGCGgCCCg -3'
miRNA:   3'- caAACUG--UCUG----UG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 141745 0.72 0.819124
Target:  5'- ---gGAgGGGCGCgGgGCGCGCGcCCCg -3'
miRNA:   3'- caaaCUgUCUGUG-UgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 139256 0.72 0.819124
Target:  5'- ---cGACGGcCACGCcCGCGCGcUCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuGCGCGC-AGGg -5'
29395 5' -52.3 NC_006151.1 + 25408 0.72 0.819124
Target:  5'- ---cGACGGGgGCGCcgccgccccACGCGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUgUGUG---------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 84426 0.71 0.827848
Target:  5'- ---aGGCGG-CGCGCggcgGCGCGCGgCCCa -3'
miRNA:   3'- caaaCUGUCuGUGUG----UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 8957 0.71 0.827848
Target:  5'- -----cCGGuccCACGCGCGCGCGcCCCg -3'
miRNA:   3'- caaacuGUCu--GUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 102393 0.71 0.836385
Target:  5'- --cUGGCGcuggucgcGGCGCGCGuCGCGCGgCCCg -3'
miRNA:   3'- caaACUGU--------CUGUGUGU-GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 74907 0.71 0.843903
Target:  5'- --aUGcCGGucCACGCugagcucgaagccGCGCGCGUCCCu -3'
miRNA:   3'- caaACuGUCu-GUGUG-------------UGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 142922 0.71 0.844728
Target:  5'- ---gGGCAccGACACcguccccaccACACGCGCG-CCCg -3'
miRNA:   3'- caaaCUGU--CUGUG----------UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 91571 0.71 0.844728
Target:  5'- --aUGGCGG-CGCGCGCGUGC-UCCa -3'
miRNA:   3'- caaACUGUCuGUGUGUGCGCGcAGGg -5'
29395 5' -52.3 NC_006151.1 + 84774 0.71 0.844728
Target:  5'- ---aGGCGGACGCG-GCGCGCGcCgCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgUGCGCGCaG-GG- -5'
29395 5' -52.3 NC_006151.1 + 50003 0.71 0.844728
Target:  5'- cGUUUG-CGcGC-CGCGCGCGCGgCCCg -3'
miRNA:   3'- -CAAACuGUcUGuGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 88686 0.71 0.852868
Target:  5'- -gUUGGCGGACAgCACGCGCcacGUGUagacgCCCu -3'
miRNA:   3'- caAACUGUCUGU-GUGUGCG---CGCA-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 13114 0.71 0.852868
Target:  5'- ---cGGCGGGuCACGCGCGCucccGCGacuUCCCg -3'
miRNA:   3'- caaaCUGUCU-GUGUGUGCG----CGC---AGGG- -5'
29395 5' -52.3 NC_006151.1 + 132487 0.71 0.852868
Target:  5'- ----aGCAGGCGCGCGuagcgcuccuCGCGCG-CCCg -3'
miRNA:   3'- caaacUGUCUGUGUGU----------GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 135452 0.71 0.860799
Target:  5'- --cUGGCAGGCcugguagguGCGCGCcaGCGUGUCCg -3'
miRNA:   3'- caaACUGUCUG---------UGUGUG--CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 10818 0.71 0.860799
Target:  5'- ----cACAuACACACACGCGCGcgcacCCCg -3'
miRNA:   3'- caaacUGUcUGUGUGUGCGCGCa----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.