miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 120498 1.06 0.002111
Target:  5'- gUUCUGGACGCUGCUGCAGCGCAACCAg -3'
miRNA:   3'- -AAGACCUGCGACGACGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 102269 0.77 0.204101
Target:  5'- -cCUGGGCGC-GCUGCcggAGCGCGGCCc -3'
miRNA:   3'- aaGACCUGCGaCGACG---UCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 85934 0.75 0.281171
Target:  5'- -gCUGGGC-CUGCUGCuGCaGCAGCCGc -3'
miRNA:   3'- aaGACCUGcGACGACGuCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 118780 0.75 0.309138
Target:  5'- -cCUGGACGCggugGCgcGCGGCGCGGCgCAc -3'
miRNA:   3'- aaGACCUGCGa---CGa-CGUCGCGUUG-GU- -5'
29397 3' -57.6 NC_006151.1 + 112806 0.75 0.309138
Target:  5'- ---cGGGCGCgcgucGCUGCAGCGCGccuucGCCAc -3'
miRNA:   3'- aagaCCUGCGa----CGACGUCGCGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 50465 0.74 0.339176
Target:  5'- ---cGGGCGCUcGCgccagcGCGGCGCGACCGa -3'
miRNA:   3'- aagaCCUGCGA-CGa-----CGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 104904 0.73 0.36306
Target:  5'- --gUGGACGCgGCgGCGGCGCGcgACCGc -3'
miRNA:   3'- aagACCUGCGaCGaCGUCGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 102693 0.73 0.36306
Target:  5'- ---gGGGCGCccgGCgcggGCGGCGCGGCCGa -3'
miRNA:   3'- aagaCCUGCGa--CGa---CGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 98805 0.73 0.371277
Target:  5'- -aCUGGGCGCUGCcgcuggcguugGCGGUGC-GCCAg -3'
miRNA:   3'- aaGACCUGCGACGa----------CGUCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 17819 0.73 0.388086
Target:  5'- -cCUGGGCGCgGCgggGCGG-GCGGCCAc -3'
miRNA:   3'- aaGACCUGCGaCGa--CGUCgCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 118159 0.73 0.388086
Target:  5'- ---cGGugGCgccGCUGguGCGCGGCCu -3'
miRNA:   3'- aagaCCugCGa--CGACguCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 107020 0.72 0.414219
Target:  5'- cUCUcGGCGCUGaucGCGGCGCGGCCc -3'
miRNA:   3'- aAGAcCUGCGACga-CGUCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 122647 0.72 0.414219
Target:  5'- -cCUGGACGacCUGgaGCGGCGCGagcGCCGc -3'
miRNA:   3'- aaGACCUGC--GACgaCGUCGCGU---UGGU- -5'
29397 3' -57.6 NC_006151.1 + 104053 0.72 0.423167
Target:  5'- cUCUGGGCGCgcgcgGCcgacGCGGCGCugcGCCGc -3'
miRNA:   3'- aAGACCUGCGa----CGa---CGUCGCGu--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 69978 0.72 0.450691
Target:  5'- ---cGGGCGCUGCaGCGGCgGCAGCg- -3'
miRNA:   3'- aagaCCUGCGACGaCGUCG-CGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 118118 0.72 0.450691
Target:  5'- -gCUGG-CGCUGCUcGUGGCGCGcagcGCCGa -3'
miRNA:   3'- aaGACCuGCGACGA-CGUCGCGU----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 46956 0.71 0.47917
Target:  5'- -aCUGGGgcgacccuguUGCUGCUGCGGCcGCcGCCGc -3'
miRNA:   3'- aaGACCU----------GCGACGACGUCG-CGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85233 0.71 0.47917
Target:  5'- -cCUGGACGC-GCUGagccaGGCGCuGGCCGa -3'
miRNA:   3'- aaGACCUGCGaCGACg----UCGCG-UUGGU- -5'
29397 3' -57.6 NC_006151.1 + 61763 0.71 0.508502
Target:  5'- gUCgcggGGGcCGUggUGCUGCGGCGCGagGCCGg -3'
miRNA:   3'- aAGa---CCU-GCG--ACGACGUCGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 85490 0.71 0.508502
Target:  5'- ---aGGACGCgccGCUGCuGCGC-GCCAc -3'
miRNA:   3'- aagaCCUGCGa--CGACGuCGCGuUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.