miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 2592 0.68 0.652423
Target:  5'- -gCUGGcgguagGCGCgcgGCgGCAGCGgGACCGg -3'
miRNA:   3'- aaGACC------UGCGa--CGaCGUCGCgUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 4050 0.68 0.658673
Target:  5'- ---cGGGCGCgggccccguccacGCUGUAGCGCA-CCAg -3'
miRNA:   3'- aagaCCUGCGa------------CGACGUCGCGUuGGU- -5'
29397 3' -57.6 NC_006151.1 + 5317 0.7 0.528472
Target:  5'- -gCUGGA-GCUGCUGaAGCcGCGGCCGc -3'
miRNA:   3'- aaGACCUgCGACGACgUCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 11059 0.67 0.703117
Target:  5'- -cCUGGACGCggGCcacacugUGCGGCG-GACCGu -3'
miRNA:   3'- aaGACCUGCGa-CG-------ACGUCGCgUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 17819 0.73 0.388086
Target:  5'- -cCUGGGCGCgGCgggGCGG-GCGGCCAc -3'
miRNA:   3'- aaGACCUGCGaCGa--CGUCgCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 20140 0.68 0.662836
Target:  5'- ---cGGGCGCcGCggggGCGGCGCGuggACCGc -3'
miRNA:   3'- aagaCCUGCGaCGa---CGUCGCGU---UGGU- -5'
29397 3' -57.6 NC_006151.1 + 24516 0.69 0.569214
Target:  5'- -gUUGGGCGCcgccacGUUGCAGCGCGcgGCCc -3'
miRNA:   3'- aaGACCUGCGa-----CGACGUCGCGU--UGGu -5'
29397 3' -57.6 NC_006151.1 + 39278 0.66 0.783085
Target:  5'- ---gGGGUGCUGCUGCucucGGCGCGggACCu -3'
miRNA:   3'- aagaCCUGCGACGACG----UCGCGU--UGGu -5'
29397 3' -57.6 NC_006151.1 + 39771 0.66 0.79242
Target:  5'- ---cGGGCGCcGCcuucggGCAccGCGCGGCCAa -3'
miRNA:   3'- aagaCCUGCGaCGa-----CGU--CGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 46956 0.71 0.47917
Target:  5'- -aCUGGGgcgacccuguUGCUGCUGCGGCcGCcGCCGc -3'
miRNA:   3'- aaGACCU----------GCGACGACGUCG-CGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 50465 0.74 0.339176
Target:  5'- ---cGGGCGCUcGCgccagcGCGGCGCGACCGa -3'
miRNA:   3'- aagaCCUGCGA-CGa-----CGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 54866 0.69 0.621116
Target:  5'- cUCUGG-CaGCcGCUGUGGCGCGACgCGa -3'
miRNA:   3'- aAGACCuG-CGaCGACGUCGCGUUG-GU- -5'
29397 3' -57.6 NC_006151.1 + 58380 0.69 0.610687
Target:  5'- aUCUcGACGgaGagcGCGGCGCAGCCGg -3'
miRNA:   3'- aAGAcCUGCgaCga-CGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 61763 0.71 0.508502
Target:  5'- gUCgcggGGGcCGUggUGCUGCGGCGCGagGCCGg -3'
miRNA:   3'- aAGa---CCU-GCG--ACGACGUCGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 64951 0.69 0.589886
Target:  5'- -cCUGGcCGC-GCUGCGgGCGCAgGCCGa -3'
miRNA:   3'- aaGACCuGCGaCGACGU-CGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 67014 0.67 0.718388
Target:  5'- uUUCUGGccACGgUGCUGCucggggaccacgccgAGCGC-GCCAc -3'
miRNA:   3'- -AAGACC--UGCgACGACG---------------UCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 68942 0.69 0.578497
Target:  5'- aUCUGGcgcauGCGCgGCUcGCGGCGCAcggacucgcggacGCCGg -3'
miRNA:   3'- aAGACC-----UGCGaCGA-CGUCGCGU-------------UGGU- -5'
29397 3' -57.6 NC_006151.1 + 69978 0.72 0.450691
Target:  5'- ---cGGGCGCUGCaGCGGCgGCAGCg- -3'
miRNA:   3'- aagaCCUGCGACGaCGUCG-CGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 73384 0.66 0.783085
Target:  5'- ---cGGGgGC-GC-GCAGCGCGGCCGc -3'
miRNA:   3'- aagaCCUgCGaCGaCGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 75125 0.67 0.74443
Target:  5'- -gCUGGuCgGCgGCcgGCGGCGCGGCCc -3'
miRNA:   3'- aaGACCuG-CGaCGa-CGUCGCGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.