miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 141626 0.69 0.579531
Target:  5'- aUCgggcgGGuCGCUGCcgcgGCGGCGCGGCgGg -3'
miRNA:   3'- aAGa----CCuGCGACGa---CGUCGCGUUGgU- -5'
29397 3' -57.6 NC_006151.1 + 139303 0.66 0.754272
Target:  5'- gUCUGcGGCGCgUGCUGCucgaccGUGCucGCCGg -3'
miRNA:   3'- aAGAC-CUGCG-ACGACGu-----CGCGu-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 135012 0.67 0.714332
Target:  5'- ---gGGGCGCggggggGCaGCAGCGgGGCCGc -3'
miRNA:   3'- aagaCCUGCGa-----CGaCGUCGCgUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 129089 0.67 0.714332
Target:  5'- cUCggGGGCGUaGUUGCuGCGCAcgagcGCCAg -3'
miRNA:   3'- aAGa-CCUGCGaCGACGuCGCGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 128032 0.66 0.764001
Target:  5'- gUCUGcGACGCccGCgGCAGCgGCGGCa- -3'
miRNA:   3'- aAGAC-CUGCGa-CGaCGUCG-CGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 124060 0.71 0.508502
Target:  5'- -cCUGGACGCgcggacgGCcgUGC-GCGCGGCCGc -3'
miRNA:   3'- aaGACCUGCGa------CG--ACGuCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 122647 0.72 0.414219
Target:  5'- -cCUGGACGacCUGgaGCGGCGCGagcGCCGc -3'
miRNA:   3'- aaGACCUGC--GACgaCGUCGCGU---UGGU- -5'
29397 3' -57.6 NC_006151.1 + 122395 0.67 0.70414
Target:  5'- ---cGGGCGCgcGCUgGCGGCGCucGCCGc -3'
miRNA:   3'- aagaCCUGCGa-CGA-CGUCGCGu-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 121315 0.69 0.620072
Target:  5'- -gCUGGAgcguggaggcggcCGCcgaGCUGguGCGCGACCu -3'
miRNA:   3'- aaGACCU-------------GCGa--CGACguCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 120498 1.06 0.002111
Target:  5'- gUUCUGGACGCUGCUGCAGCGCAACCAg -3'
miRNA:   3'- -AAGACCUGCGACGACGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 119991 0.66 0.764001
Target:  5'- -cCUGGcgcggcgcACGCUGCUgGCGGUGCugcagGACCu -3'
miRNA:   3'- aaGACC--------UGCGACGA-CGUCGCG-----UUGGu -5'
29397 3' -57.6 NC_006151.1 + 118780 0.75 0.309138
Target:  5'- -cCUGGACGCggugGCgcGCGGCGCGGCgCAc -3'
miRNA:   3'- aaGACCUGCGa---CGa-CGUCGCGUUG-GU- -5'
29397 3' -57.6 NC_006151.1 + 118159 0.73 0.388086
Target:  5'- ---cGGugGCgccGCUGguGCGCGGCCu -3'
miRNA:   3'- aagaCCugCGa--CGACguCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 118118 0.72 0.450691
Target:  5'- -gCUGG-CGCUGCUcGUGGCGCGcagcGCCGa -3'
miRNA:   3'- aaGACCuGCGACGA-CGUCGCGU----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 116981 0.69 0.600274
Target:  5'- -gCUGGACGUgaggcGCUGguGCcGCAgcACCAc -3'
miRNA:   3'- aaGACCUGCGa----CGACguCG-CGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 114105 0.68 0.672186
Target:  5'- -cCUGGGCcucggcgGCUGCUGCcccacguGCGCcGCCGc -3'
miRNA:   3'- aaGACCUG-------CGACGACGu------CGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 113801 0.71 0.508502
Target:  5'- -----cGCGCUGCUGCGGCGCcacGGCCu -3'
miRNA:   3'- aagaccUGCGACGACGUCGCG---UUGGu -5'
29397 3' -57.6 NC_006151.1 + 113343 0.69 0.600274
Target:  5'- -gCUGG-CGCUGaaGCAcguGCGCGGCCGc -3'
miRNA:   3'- aaGACCuGCGACgaCGU---CGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 112806 0.75 0.309138
Target:  5'- ---cGGGCGCgcgucGCUGCAGCGCGccuucGCCAc -3'
miRNA:   3'- aagaCCUGCGa----CGACGUCGCGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 107451 0.68 0.652423
Target:  5'- -gCUGGAC-CUGCU-CGGCGaCGACCu -3'
miRNA:   3'- aaGACCUGcGACGAcGUCGC-GUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.