miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 75433 0.66 0.764001
Target:  5'- --gUGGGCGCgaaGCUGCcGGCGUGGCg- -3'
miRNA:   3'- aagACCUGCGa--CGACG-UCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 84487 0.69 0.600274
Target:  5'- cUUCgaGGcCGCUGCgaucccggGCAGCGCGcGCCAc -3'
miRNA:   3'- -AAGa-CCuGCGACGa-------CGUCGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 85233 0.71 0.47917
Target:  5'- -cCUGGACGC-GCUGagccaGGCGCuGGCCGa -3'
miRNA:   3'- aaGACCUGCGaCGACg----UCGCG-UUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85490 0.71 0.508502
Target:  5'- ---aGGACGCgccGCUGCuGCGC-GCCAc -3'
miRNA:   3'- aagaCCUGCGa--CGACGuCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85529 0.68 0.641992
Target:  5'- ---cGGGCcugcuGCUGCUGCGGCGCcuGCUg -3'
miRNA:   3'- aagaCCUG-----CGACGACGUCGCGu-UGGu -5'
29397 3' -57.6 NC_006151.1 + 85779 0.7 0.529478
Target:  5'- -gCUGGACGCgcacucgauccgcgcGCgcgUGCAGCGCcACCAg -3'
miRNA:   3'- aaGACCUGCGa--------------CG---ACGUCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85835 0.67 0.734487
Target:  5'- -cCUGGugGC-GCUGgAGCuGCAgaaccGCCAg -3'
miRNA:   3'- aaGACCugCGaCGACgUCG-CGU-----UGGU- -5'
29397 3' -57.6 NC_006151.1 + 85934 0.75 0.281171
Target:  5'- -gCUGGGC-CUGCUGCuGCaGCAGCCGc -3'
miRNA:   3'- aaGACCUGcGACGACGuCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 86676 0.67 0.74443
Target:  5'- cUCUcGACgGCcgugaacaacaUGCUGCuGCGCGACCGc -3'
miRNA:   3'- aAGAcCUG-CG-----------ACGACGuCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 86713 0.66 0.754272
Target:  5'- -gCUGGGaGCUGgUcGCGGCGCGccGCCGc -3'
miRNA:   3'- aaGACCUgCGACgA-CGUCGCGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 92765 0.67 0.734487
Target:  5'- -cCUGaGCG-UGCUGCGGCGCGuccCCAu -3'
miRNA:   3'- aaGACcUGCgACGACGUCGCGUu--GGU- -5'
29397 3' -57.6 NC_006151.1 + 95953 0.67 0.74443
Target:  5'- cUCUGcagcgagagcccGACGCcGCcGCGGCGCAGCa- -3'
miRNA:   3'- aAGAC------------CUGCGaCGaCGUCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 98373 0.67 0.74443
Target:  5'- cUCUGGGCGCgcGC-GCuGCGCcuGGCCu -3'
miRNA:   3'- aAGACCUGCGa-CGaCGuCGCG--UUGGu -5'
29397 3' -57.6 NC_006151.1 + 98805 0.73 0.371277
Target:  5'- -aCUGGGCGCUGCcgcuggcguugGCGGUGC-GCCAg -3'
miRNA:   3'- aaGACCUGCGACGa----------CGUCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 99121 0.67 0.72445
Target:  5'- -gCUGG-CGCUGCUGgaccccggGGCGCAgGCCGu -3'
miRNA:   3'- aaGACCuGCGACGACg-------UCGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 99571 0.68 0.672186
Target:  5'- ---cGcGGCGCUGCUGCgcgagguGGCgGCGGCCGa -3'
miRNA:   3'- aagaC-CUGCGACGACG-------UCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 100429 0.68 0.631554
Target:  5'- ---gGGGCGCUGC-GCGGCGUGAUg- -3'
miRNA:   3'- aagaCCUGCGACGaCGUCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 100886 0.69 0.621116
Target:  5'- -cCUGGAggUGCUGCgccGCGGCGCGcgcgcGCCc -3'
miRNA:   3'- aaGACCU--GCGACGa--CGUCGCGU-----UGGu -5'
29397 3' -57.6 NC_006151.1 + 102140 0.67 0.714332
Target:  5'- ---cGGGCGCgccggGCUGCuggAGCGCuucGCCGa -3'
miRNA:   3'- aagaCCUGCGa----CGACG---UCGCGu--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 102269 0.77 0.204101
Target:  5'- -cCUGGGCGC-GCUGCcggAGCGCGGCCc -3'
miRNA:   3'- aaGACCUGCGaCGACG---UCGCGUUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.