miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 3' -57.6 NC_006151.1 + 113801 0.71 0.508502
Target:  5'- -----cGCGCUGCUGCGGCGCcacGGCCu -3'
miRNA:   3'- aagaccUGCGACGACGUCGCG---UUGGu -5'
29397 3' -57.6 NC_006151.1 + 124060 0.71 0.508502
Target:  5'- -cCUGGACGCgcggacgGCcgUGC-GCGCGGCCGc -3'
miRNA:   3'- aaGACCUGCGa------CG--ACGuCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 5317 0.7 0.528472
Target:  5'- -gCUGGA-GCUGCUGaAGCcGCGGCCGc -3'
miRNA:   3'- aaGACCUgCGACGACgUCG-CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 85779 0.7 0.529478
Target:  5'- -gCUGGACGCgcacucgauccgcgcGCgcgUGCAGCGCcACCAg -3'
miRNA:   3'- aaGACCUGCGa--------------CG---ACGUCGCGuUGGU- -5'
29397 3' -57.6 NC_006151.1 + 104565 0.7 0.555872
Target:  5'- -cCUGGGCGCgcggcgcgcggacgUGCUGCaggccGGCGgCAGCCGc -3'
miRNA:   3'- aaGACCUGCG--------------ACGACG-----UCGC-GUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 24516 0.69 0.569214
Target:  5'- -gUUGGGCGCcgccacGUUGCAGCGCGcgGCCc -3'
miRNA:   3'- aaGACCUGCGa-----CGACGUCGCGU--UGGu -5'
29397 3' -57.6 NC_006151.1 + 68942 0.69 0.578497
Target:  5'- aUCUGGcgcauGCGCgGCUcGCGGCGCAcggacucgcggacGCCGg -3'
miRNA:   3'- aAGACC-----UGCGaCGA-CGUCGCGU-------------UGGU- -5'
29397 3' -57.6 NC_006151.1 + 141626 0.69 0.579531
Target:  5'- aUCgggcgGGuCGCUGCcgcgGCGGCGCGGCgGg -3'
miRNA:   3'- aAGa----CCuGCGACGa---CGUCGCGUUGgU- -5'
29397 3' -57.6 NC_006151.1 + 64951 0.69 0.589886
Target:  5'- -cCUGGcCGC-GCUGCGgGCGCAgGCCGa -3'
miRNA:   3'- aaGACCuGCGaCGACGU-CGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 84487 0.69 0.600274
Target:  5'- cUUCgaGGcCGCUGCgaucccggGCAGCGCGcGCCAc -3'
miRNA:   3'- -AAGa-CCuGCGACGa-------CGUCGCGU-UGGU- -5'
29397 3' -57.6 NC_006151.1 + 116981 0.69 0.600274
Target:  5'- -gCUGGACGUgaggcGCUGguGCcGCAgcACCAc -3'
miRNA:   3'- aaGACCUGCGa----CGACguCG-CGU--UGGU- -5'
29397 3' -57.6 NC_006151.1 + 113343 0.69 0.600274
Target:  5'- -gCUGG-CGCUGaaGCAcguGCGCGGCCGc -3'
miRNA:   3'- aaGACCuGCGACgaCGU---CGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 103041 0.69 0.610687
Target:  5'- -cCUGGuucGCGCUGCUGgccgaGGCGCAGgCGc -3'
miRNA:   3'- aaGACC---UGCGACGACg----UCGCGUUgGU- -5'
29397 3' -57.6 NC_006151.1 + 58380 0.69 0.610687
Target:  5'- aUCUcGACGgaGagcGCGGCGCAGCCGg -3'
miRNA:   3'- aAGAcCUGCgaCga-CGUCGCGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 121315 0.69 0.620072
Target:  5'- -gCUGGAgcguggaggcggcCGCcgaGCUGguGCGCGACCu -3'
miRNA:   3'- aaGACCU-------------GCGa--CGACguCGCGUUGGu -5'
29397 3' -57.6 NC_006151.1 + 54866 0.69 0.621116
Target:  5'- cUCUGG-CaGCcGCUGUGGCGCGACgCGa -3'
miRNA:   3'- aAGACCuG-CGaCGACGUCGCGUUG-GU- -5'
29397 3' -57.6 NC_006151.1 + 100886 0.69 0.621116
Target:  5'- -cCUGGAggUGCUGCgccGCGGCGCGcgcgcGCCc -3'
miRNA:   3'- aaGACCU--GCGACGa--CGUCGCGU-----UGGu -5'
29397 3' -57.6 NC_006151.1 + 103242 0.69 0.62529
Target:  5'- ---aGGAC-CUGCUGCGGCacauccgcgccauggGCGGCCAc -3'
miRNA:   3'- aagaCCUGcGACGACGUCG---------------CGUUGGU- -5'
29397 3' -57.6 NC_006151.1 + 100429 0.68 0.631554
Target:  5'- ---gGGGCGCUGC-GCGGCGUGAUg- -3'
miRNA:   3'- aagaCCUGCGACGaCGUCGCGUUGgu -5'
29397 3' -57.6 NC_006151.1 + 85529 0.68 0.641992
Target:  5'- ---cGGGCcugcuGCUGCUGCGGCGCcuGCUg -3'
miRNA:   3'- aagaCCUG-----CGACGACGUCGCGu-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.